Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   CAY62_RS11905 Genome accession   NZ_CP021151
Coordinates   2551252..2552286 (-) Length   344 a.a.
NCBI ID   WP_086367501.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain KC-Na-1     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2546252..2557286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY62_RS11880 (CAY62_11870) rsmE 2546968..2547699 (+) 732 WP_086367499.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  CAY62_RS11885 (CAY62_11875) gshB 2547720..2548667 (+) 948 WP_005297697.1 glutathione synthase -
  CAY62_RS11890 (CAY62_11880) - 2548821..2549384 (+) 564 WP_068945809.1 YqgE/AlgH family protein -
  CAY62_RS11895 (CAY62_11885) ruvX 2549381..2549806 (+) 426 WP_005297693.1 Holliday junction resolvase RuvX -
  CAY62_RS11900 (CAY62_11890) pilU 2550134..2551240 (-) 1107 WP_086367500.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  CAY62_RS11905 (CAY62_11895) pilT 2551252..2552286 (-) 1035 WP_086367501.1 type IV pilus twitching motility protein PilT Machinery gene
  CAY62_RS11910 (CAY62_11900) - 2552309..2553010 (+) 702 WP_086367502.1 YggS family pyridoxal phosphate-dependent enzyme -
  CAY62_RS11915 (CAY62_11905) proC 2553026..2553844 (+) 819 WP_086367503.1 pyrroline-5-carboxylate reductase -
  CAY62_RS11920 (CAY62_11910) - 2553856..2554413 (+) 558 WP_005297682.1 YggT family protein -
  CAY62_RS11925 (CAY62_11915) yggU 2554410..2554709 (+) 300 WP_036763214.1 DUF167 family protein YggU -
  CAY62_RS11930 (CAY62_11920) - 2554811..2555404 (+) 594 WP_044174415.1 XTP/dITP diphosphatase -
  CAY62_RS11935 (CAY62_11925) hemW 2555404..2556564 (+) 1161 WP_068968284.1 radical SAM family heme chaperone HemW -
  CAY62_RS11940 (CAY62_11930) - 2556639..2557043 (-) 405 WP_050787742.1 DUF2884 family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38122.69 Da        Isoelectric Point: 6.2676

>NTDB_id=228611 CAY62_RS11905 WP_086367501.1 2551252..2552286(-) (pilT) [Photobacterium damselae subsp. damselae strain KC-Na-1]
MDITELLGFSVKHNASDLHLSAGVPPMIRVDGDVRKLSLPALEHSEVHRLIFDIMNDAQRRQFEEELEVDFSFELPDVGR
FRVNAFHQSRGCSAVFRTIPMTIPTLESLNVPDVFYKIAQCQRGLVLVTGATGSGKSTTIAALVDYINEHTNRHILTIED
PIEFVHHSKRCLINQREVHRDTHSFQAALRSALREDPDVIVVGELRDQETISLALTAAETGHLVLGTLHTSSAAKSIDRI
IDVFPGSDKSMVRSMLSESLRAVVSQSLLKCISGGRVASHEIMMATPAIRNLIREDKIAQMYSMIQTGSAMGMQTMEQSV
KMLVAQGLVEAEEGRRIVDSAQQI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=228611 CAY62_RS11905 WP_086367501.1 2551252..2552286(-) (pilT) [Photobacterium damselae subsp. damselae strain KC-Na-1]
ATGGATATCACCGAATTATTAGGCTTCAGTGTAAAACATAACGCATCGGATCTGCATCTTTCAGCAGGTGTTCCACCTAT
GATCCGTGTAGATGGTGATGTACGCAAGTTAAGTTTACCTGCATTAGAACACTCAGAGGTTCATCGTCTGATTTTTGATA
TCATGAATGATGCCCAACGTCGTCAATTTGAAGAAGAGTTAGAAGTCGACTTCTCATTTGAATTACCCGATGTTGGCCGT
TTTCGTGTTAACGCCTTTCACCAATCTCGAGGTTGTTCTGCGGTCTTTCGTACTATCCCTATGACCATTCCAACGTTGGA
ATCTCTGAATGTGCCCGATGTTTTCTACAAAATAGCACAATGTCAGCGTGGATTGGTATTAGTTACAGGGGCTACAGGTT
CTGGTAAATCCACCACCATTGCAGCATTGGTTGATTATATTAATGAGCATACCAATCGTCATATCCTCACGATTGAAGAT
CCAATTGAATTTGTGCATCACAGTAAACGTTGTTTGATTAACCAACGAGAAGTGCATCGTGATACCCACAGTTTTCAAGC
CGCTTTGCGCTCGGCATTACGTGAAGATCCCGATGTGATTGTTGTGGGGGAATTGCGAGATCAAGAGACCATCAGTTTAG
CGTTAACTGCTGCAGAAACCGGACACTTGGTTTTAGGTACGCTACATACAAGTTCAGCAGCCAAAAGTATTGACCGTATT
ATCGATGTATTTCCTGGTAGTGATAAATCCATGGTTCGCTCCATGTTATCTGAGTCATTACGTGCAGTGGTTTCCCAAAG
TTTGTTGAAATGCATTAGCGGTGGTCGTGTGGCTTCCCATGAGATCATGATGGCAACCCCTGCGATTCGAAATTTGATCC
GCGAAGATAAGATTGCTCAGATGTATTCCATGATCCAAACCGGATCGGCAATGGGGATGCAGACAATGGAACAGAGTGTG
AAGATGCTGGTTGCCCAAGGACTAGTGGAAGCAGAAGAAGGTCGTCGTATTGTCGACAGTGCCCAACAGATCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

79.88

96.802

0.773
  pilT Vibrio cholerae strain A1552

79.88

96.802

0.773
  pilT Acinetobacter baumannii D1279779

70.448

97.384

0.686
  pilT Acinetobacter baumannii strain A118

70.448

97.384

0.686
  pilT Pseudomonas aeruginosa PAK

70.149

97.384

0.683
  pilT Acinetobacter nosocomialis M2

70.149

97.384

0.683
  pilT Pseudomonas stutzeri DSM 10701

69.851

97.384

0.68
  pilT Acinetobacter baylyi ADP1

68.421

99.419

0.68
  pilT Legionella pneumophila strain Lp02

69.605

95.64

0.666
  pilT Legionella pneumophila strain ERS1305867

69.605

95.64

0.666
  pilT Neisseria meningitidis 8013

65.579

97.965

0.642
  pilT Neisseria gonorrhoeae MS11

65.282

97.965

0.64
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50

100

0.5
  pilU Vibrio cholerae strain A1552

40.87

100

0.41
  pilU Pseudomonas stutzeri DSM 10701

40.58

100

0.407
  pilU Acinetobacter baylyi ADP1

39.13

93.605

0.366

Multiple sequence alignment