Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   MTAI_RS11860 Genome accession   NZ_CP021130
Coordinates   2412560..2413696 (+) Length   378 a.a.
NCBI ID   WP_043983346.1    Uniprot ID   -
Organism   Meiothermus taiwanensis WR-220     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2407560..2418696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTAI_RS11850 (Mtai_v1c23380) - 2409600..2411063 (+) 1464 WP_036197546.1 lyase family protein -
  MTAI_RS11855 (Mtai_v1c23390) - 2411363..2412370 (+) 1008 WP_027888850.1 isocitrate/isopropylmalate dehydrogenase family protein -
  MTAI_RS11860 (Mtai_v1c23400) pilM 2412560..2413696 (+) 1137 WP_043983346.1 type IV pilus assembly protein PilM Machinery gene
  MTAI_RS11865 (Mtai_v1c23410) pilN 2413689..2414354 (+) 666 WP_027887067.1 hypothetical protein Machinery gene
  MTAI_RS11870 (Mtai_v1c23420) pilO 2414335..2414952 (+) 618 WP_245392042.1 type 4a pilus biogenesis protein PilO Machinery gene
  MTAI_RS11875 (Mtai_v1c23430) - 2414949..2415587 (+) 639 WP_245453116.1 hypothetical protein -
  MTAI_RS11880 (Mtai_v1c23440) - 2415591..2416397 (+) 807 WP_119342530.1 IS5 family transposase -
  MTAI_RS11885 (Mtai_v1c23450) - 2416440..2416844 (+) 405 WP_245453117.1 hypothetical protein -
  MTAI_RS11890 (Mtai_v1c23460) - 2416854..2418377 (+) 1524 WP_027887064.1 secretin N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 41463.88 Da        Isoelectric Point: 4.5016

>NTDB_id=228453 MTAI_RS11860 WP_043983346.1 2412560..2413696(+) (pilM) [Meiothermus taiwanensis WR-220]
MRDFFGGLLRPRIEALGLEIGSANIKMVELSGTPPSLKNLSIRPTPPGVIQEGSIIEPGALTDVIKEMLAEMRTRKRYVV
TAASNLAVITRTLQVPKMPIKQMEEAVRWEAERYIPFPIDEVVLDYAPLDAYESIPDGEQMDVVVGAARQETVASLVEAL
KAAGLEPLVIDVKPFAGLRTLAARLVSTDREPITLFLEIGAESSALVLTRGERLLLNRVINLSGKDFTAAISKAFNIDVV
AAEDAKKNYGLATIPTEDEDLLLDFDAERERFNPARMYDAIRPVLVELTTELRRSLEFFRVQVGDLGVDQGFVAGGGSKL
RSLVPLLSDTLGIPLETADPWQGLQIDKSRFDLEYLRSLAPEFTVPVGLALRGVNPLD

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=228453 MTAI_RS11860 WP_043983346.1 2412560..2413696(+) (pilM) [Meiothermus taiwanensis WR-220]
GTGCGTGATTTCTTTGGCGGGTTGCTGAGACCCAGAATCGAGGCGCTCGGCCTCGAGATCGGATCGGCCAACATCAAAAT
GGTCGAGCTGTCCGGAACCCCCCCCAGCCTGAAGAACCTAAGCATCAGGCCCACCCCACCAGGGGTGATCCAGGAGGGTT
CGATCATCGAACCGGGCGCTCTGACCGACGTCATCAAGGAAATGCTGGCTGAGATGCGCACCCGCAAGCGCTATGTGGTA
ACCGCGGCCAGCAACCTGGCGGTTATCACCCGCACCTTGCAGGTGCCCAAGATGCCCATCAAGCAGATGGAGGAAGCCGT
ACGCTGGGAGGCTGAGCGTTATATACCCTTCCCAATTGACGAGGTGGTGCTGGATTACGCACCCCTCGACGCTTATGAGT
CCATACCCGACGGCGAACAGATGGACGTGGTGGTAGGGGCTGCCCGGCAAGAGACCGTGGCCAGCCTGGTCGAGGCCCTC
AAAGCCGCGGGGCTGGAACCCCTGGTGATAGACGTTAAGCCATTTGCCGGTCTGCGCACCCTGGCCGCCCGTCTGGTATC
CACCGACCGCGAACCCATCACCCTCTTCCTCGAGATCGGGGCCGAATCCTCGGCCCTGGTTCTGACCCGCGGCGAGCGGC
TGCTCCTGAACCGCGTTATCAACCTATCCGGCAAGGACTTCACCGCTGCCATCTCAAAGGCATTCAACATCGACGTGGTA
GCCGCCGAAGATGCCAAGAAAAACTACGGCCTGGCCACCATCCCCACCGAAGACGAAGACCTGCTCCTCGACTTCGACGC
CGAGCGCGAGCGCTTCAATCCAGCCCGTATGTACGATGCCATCCGCCCGGTGCTGGTCGAGCTGACCACCGAGCTGCGCC
GAAGCCTGGAGTTCTTCCGGGTTCAGGTGGGCGACCTGGGGGTGGATCAGGGCTTTGTGGCCGGAGGGGGTAGCAAACTG
AGAAGCCTGGTGCCGCTTTTGTCTGATACGCTGGGCATCCCACTGGAAACCGCCGACCCCTGGCAGGGTCTCCAAATCGA
CAAAAGCCGCTTCGATCTGGAGTACCTGCGCAGTTTGGCACCCGAGTTTACGGTACCGGTGGGCCTGGCCCTACGGGGGG
TGAATCCGCTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Thermus thermophilus HB27

63.441

98.413

0.624

Multiple sequence alignment