Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   MTAI_RS11870 Genome accession   NZ_CP021130
Coordinates   2414335..2414952 (+) Length   205 a.a.
NCBI ID   WP_245392042.1    Uniprot ID   -
Organism   Meiothermus taiwanensis WR-220     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2415591..2416397 2414335..2414952 flank 639


Gene organization within MGE regions


Location: 2414335..2416397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTAI_RS11870 (Mtai_v1c23420) pilO 2414335..2414952 (+) 618 WP_245392042.1 type 4a pilus biogenesis protein PilO Machinery gene
  MTAI_RS11875 (Mtai_v1c23430) - 2414949..2415587 (+) 639 WP_245453116.1 hypothetical protein -
  MTAI_RS11880 (Mtai_v1c23440) - 2415591..2416397 (+) 807 WP_119342530.1 IS5 family transposase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22405.68 Da        Isoelectric Point: 9.6130

>NTDB_id=228455 MTAI_RS11870 WP_245392042.1 2414335..2414952(+) (pilO) [Meiothermus taiwanensis WR-220]
MVALLARMGQREWAIVAIVAALLLGMMWYFFVTQPLQGRILELQAEVDRLTVERDRGRAAQRALPQLRETIARLDAERQQ
FLRELPPTEQLGRVLSSLAQTARESGVVLRTLSRSPGDNQGVANVRATNLALQVESPFPELYVFLRSLEGLQRFATVSGL
NLTLSGSGAAATEAQATNPIINTSLTMTVYTYTGQGQPSQPGGQP

Nucleotide


Download         Length: 618 bp        

>NTDB_id=228455 MTAI_RS11870 WP_245392042.1 2414335..2414952(+) (pilO) [Meiothermus taiwanensis WR-220]
GTGGTAGCCCTTCTCGCTAGAATGGGCCAGCGTGAGTGGGCCATCGTTGCCATAGTGGCCGCCTTGTTGCTGGGCATGAT
GTGGTACTTCTTTGTGACCCAGCCCCTCCAAGGGCGCATCCTCGAGTTGCAGGCCGAGGTGGATCGCCTGACCGTTGAGC
GCGACCGGGGCCGTGCAGCCCAGCGCGCCTTGCCCCAGCTTCGCGAGACCATCGCCCGTCTGGATGCCGAACGGCAGCAG
TTTTTGCGTGAACTACCCCCCACCGAACAGCTCGGCCGGGTGTTGAGCTCCCTGGCGCAAACCGCCCGGGAAAGTGGGGT
GGTGCTGCGCACCCTGAGCCGCAGCCCTGGCGACAACCAGGGAGTTGCCAATGTGCGGGCCACCAACCTGGCCTTGCAGG
TTGAGTCGCCCTTCCCCGAGTTGTACGTATTCTTGCGCAGCCTCGAGGGGCTGCAGCGCTTCGCCACCGTCTCAGGCCTC
AACCTTACCCTTAGTGGCAGCGGGGCTGCCGCCACCGAAGCCCAGGCCACCAACCCCATCATCAACACCAGCCTGACCAT
GACGGTCTACACATACACCGGTCAGGGTCAGCCCAGCCAGCCTGGAGGTCAGCCATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(44-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Thermus thermophilus HB27

50

97.561

0.488

Multiple sequence alignment