Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MTAI_RS04375 Genome accession   NZ_CP021130
Coordinates   863868..865088 (-) Length   406 a.a.
NCBI ID   WP_027887148.1    Uniprot ID   A0A399DWQ5
Organism   Meiothermus taiwanensis WR-220     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 858868..870088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTAI_RS04350 (Mtai_v1c08540) galE 859799..860803 (+) 1005 WP_027887143.1 UDP-glucose 4-epimerase GalE -
  MTAI_RS04355 (Mtai_v1c08550) - 860811..861353 (-) 543 WP_027887144.1 hypothetical protein -
  MTAI_RS04360 (Mtai_v1c08560) - 861371..862798 (-) 1428 WP_027887145.1 FAD-linked oxidase C-terminal domain-containing protein -
  MTAI_RS04365 (Mtai_v1c08570) - 862822..863319 (-) 498 WP_223299791.1 hypothetical protein -
  MTAI_RS04370 (Mtai_v1c08580) - 863435..863893 (+) 459 WP_027887147.1 EVE domain-containing protein -
  MTAI_RS04375 (Mtai_v1c08590) pilC 863868..865088 (-) 1221 WP_027887148.1 type II secretion system F family protein Machinery gene
  MTAI_RS04380 (Mtai_v1c08600) scpB 865179..865703 (+) 525 WP_027887149.1 SMC-Scp complex subunit ScpB -
  MTAI_RS04385 (Mtai_v1c08610) - 865793..866527 (+) 735 WP_043982090.1 2-phosphosulfolactate phosphatase -
  MTAI_RS04390 (Mtai_v1c08620) - 866530..867273 (+) 744 WP_027887151.1 WecB/TagA/CpsF family glycosyltransferase -
  MTAI_RS04395 (Mtai_v1c08630) - 867391..868308 (-) 918 WP_027887152.1 peptidylprolyl isomerase -
  MTAI_RS04400 (Mtai_v1c08640) - 868580..869893 (+) 1314 WP_027887153.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44569.35 Da        Isoelectric Point: 9.4889

>NTDB_id=228444 MTAI_RS04375 WP_027887148.1 863868..865088(-) (pilC) [Meiothermus taiwanensis WR-220]
MPTYQYKARDRQGRLINAVIEADDIRTAARNLREKGLFIAEIKEPGKGLQAEIKLPGLDPKPGLKDLAIFSRQLATMLNA
GLPIVQALAILERQTEKKKFQSILKEIRTEVEGGANFSEALSKHSLFTRLYINLVRAGETSGTLDAILDRLATFLENELA
LRGKIRSAMTYPAIVFVFAIGVTYFLLTGIVPQFAQILTGLGSELPLLTRALMGISDFLRQSTIFIALMAVALYFAYRSY
YRTDKGRHQIDQIKLKLPVFGNLMKKSALARFSRTFGLLISSGVNIVEALDITKGTAGNAIVEDILEQTKIAIQAGEPVF
TTIQAHPQVFPPMVSSMIAIGEETGALDTMLQKIADFYEREVDEAVSALTAAIEPLMIIFLGLVVGVIVAGMFLPLFKII
GTLSSQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=228444 MTAI_RS04375 WP_027887148.1 863868..865088(-) (pilC) [Meiothermus taiwanensis WR-220]
ATGCCAACCTATCAATACAAGGCCAGGGATCGCCAAGGGCGGTTGATCAATGCCGTCATCGAAGCCGATGACATCCGCAC
AGCAGCCCGCAATTTGCGCGAAAAAGGTCTGTTCATCGCCGAGATCAAGGAGCCTGGTAAGGGCCTGCAGGCCGAGATTA
AGCTGCCAGGGCTGGATCCCAAGCCGGGGCTTAAGGATCTGGCCATCTTCAGCCGCCAGCTCGCCACCATGCTCAACGCC
GGTCTGCCCATTGTGCAGGCCCTGGCTATTCTGGAACGGCAAACCGAAAAGAAAAAATTCCAGAGCATTCTCAAAGAAAT
CCGCACTGAGGTGGAGGGGGGGGCCAATTTCAGCGAGGCCCTGAGCAAGCACAGTTTGTTTACCCGCCTTTACATCAACC
TGGTGCGGGCCGGCGAGACCTCGGGTACGCTGGATGCCATTCTGGACAGGTTAGCCACCTTCCTGGAAAACGAGCTGGCC
CTGCGCGGAAAAATACGCTCGGCCATGACCTACCCAGCCATCGTATTTGTGTTTGCCATCGGGGTGACCTACTTCCTTCT
GACTGGCATTGTGCCGCAGTTCGCCCAGATTCTGACCGGCCTGGGCTCCGAGCTGCCGCTCCTGACCCGGGCCCTGATGG
GCATCTCCGACTTTTTGCGCCAGAGCACTATCTTTATCGCCTTAATGGCGGTGGCGCTGTACTTTGCTTACCGATCCTAC
TACCGAACCGACAAAGGCCGGCACCAGATCGACCAGATCAAGCTCAAGCTGCCAGTATTTGGCAACCTGATGAAAAAAAG
CGCCCTGGCCCGCTTTTCCCGCACCTTTGGCCTGCTGATCTCGAGCGGCGTAAACATCGTGGAGGCCCTCGACATCACCA
AAGGCACAGCGGGCAACGCCATTGTGGAAGATATCCTCGAGCAGACCAAAATCGCCATTCAGGCCGGCGAGCCGGTCTTC
ACCACCATCCAGGCCCACCCGCAGGTCTTCCCTCCCATGGTCAGCTCGATGATTGCCATTGGGGAAGAGACCGGTGCCCT
GGATACCATGTTGCAAAAAATCGCGGACTTCTACGAGCGCGAGGTGGACGAAGCTGTCAGCGCGCTCACAGCAGCCATCG
AGCCCCTGATGATTATCTTCCTGGGCCTGGTCGTGGGCGTGATTGTGGCCGGGATGTTCCTGCCGCTCTTCAAAATTATT
GGGACGCTCTCATCGCAGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-395)

Type II secretion system (T2SS), protein F (T2SSF)

(70-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A399DWQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

75.862

100

0.759
  pilC Legionella pneumophila strain ERS1305867

37.75

98.522

0.372
  pilC Acinetobacter baumannii D1279779

37.313

99.015

0.369

Multiple sequence alignment