Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KIM5_RS11250 Genome accession   NZ_CP021124
Coordinates   2226946..2227458 (+) Length   170 a.a.
NCBI ID   WP_086156221.1    Uniprot ID   A0A2A5KVS5
Organism   Rhizobium sp. Kim5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2221946..2232458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM5_RS11235 (Kim5_CH02216) - 2222452..2223258 (-) 807 WP_077993688.1 DUF72 domain-containing protein -
  KIM5_RS11240 (Kim5_CH02217) - 2223283..2223744 (-) 462 WP_077993686.1 GNAT family N-acetyltransferase -
  KIM5_RS11245 (Kim5_CH02218) uvrA 2223741..2226662 (-) 2922 WP_077993685.1 excinuclease ABC subunit UvrA -
  KIM5_RS11250 (Kim5_CH02219) ssb 2226946..2227458 (+) 513 WP_086156221.1 single-stranded DNA-binding protein Machinery gene
  KIM5_RS11255 (Kim5_CH02220) - 2227543..2228190 (-) 648 WP_038688903.1 MarC family protein -
  KIM5_RS11260 (Kim5_CH02221) gyrA 2228428..2231250 (+) 2823 WP_077993681.1 DNA gyrase subunit A -
  KIM5_RS35200 (Kim5_CH02222) - 2231400..2231534 (-) 135 WP_010056528.1 hypothetical protein -
  KIM5_RS34215 - 2231571..2231726 (-) 156 WP_003539654.1 hypothetical protein -
  KIM5_RS35345 (Kim5_CH02223) - 2231858..2232148 (-) 291 WP_125461974.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18396.06 Da        Isoelectric Point: 5.3093

>NTDB_id=228437 KIM5_RS11250 WP_086156221.1 2226946..2227458(+) (ssb) [Rhizobium sp. Kim5]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFSSTLTMLDGRGDGGGASSGFGGSRGGSSNNDYGDDYGAPASSPSSNRGGGGNF
SRDLDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=228437 KIM5_RS11250 WP_086156221.1 2226946..2227458(+) (ssb) [Rhizobium sp. Kim5]
ATGGCTGGTAGCGTGAACAAGGTAATTCTGGTTGGAAACGTGGGTGCAGACCCCGAAATCCGCCGCACTCAGGACGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACCTGGCGTGATCGCAATTCCGGCGAACGCCGCGAAAAGACCGAAT
GGCATACTGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTGGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTTTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGCAGGGCCAGGACCGTTATTCGACGGAAGTGGTGCTGCAGGGCTT
CAGCTCGACGCTGACCATGCTCGACGGCCGCGGCGACGGTGGTGGTGCGAGCTCCGGTTTCGGCGGCAGCCGCGGCGGCA
GCAGCAATAATGATTACGGCGACGATTACGGCGCCCCGGCTTCGTCCCCATCGTCGAACCGCGGTGGTGGCGGCAACTTC
TCGCGCGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5KVS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.506
  ssb Vibrio cholerae strain A1552

47.126

100

0.482
  ssb Neisseria meningitidis MC58

36.872

100

0.388
  ssb Neisseria gonorrhoeae MS11

36.872

100

0.388

Multiple sequence alignment