Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EBAPG3_RS14275 Genome accession   NZ_CP021106
Coordinates   3121186..3121647 (-) Length   153 a.a.
NCBI ID   WP_004180081.1    Uniprot ID   A0A1W6SSP8
Organism   Nitrosospira lacus strain APG3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3116186..3126647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBAPG3_RS14250 (EBAPG3_014245) - 3116793..3117215 (-) 423 WP_040853036.1 YdbL family protein -
  EBAPG3_RS14255 (EBAPG3_014250) - 3117251..3117460 (-) 210 WP_040853024.1 hypothetical protein -
  EBAPG3_RS14260 (EBAPG3_014255) - 3117468..3119510 (-) 2043 WP_004180093.1 hypothetical protein -
  EBAPG3_RS14265 (EBAPG3_014260) cysM 3119766..3120653 (-) 888 WP_004180085.1 cysteine synthase CysM -
  EBAPG3_RS14270 (EBAPG3_014265) comE 3120858..3121154 (-) 297 WP_004180083.1 ComEA family DNA-binding protein Machinery gene
  EBAPG3_RS14275 (EBAPG3_014270) ssb 3121186..3121647 (-) 462 WP_004180081.1 single-stranded DNA-binding protein Machinery gene
  EBAPG3_RS14280 (EBAPG3_014275) - 3121648..3123006 (-) 1359 WP_004180079.1 MFS transporter -
  EBAPG3_RS14285 (EBAPG3_014280) uvrA 3123133..3125952 (+) 2820 WP_085922070.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17008.90 Da        Isoelectric Point: 5.3684

>NTDB_id=228249 EBAPG3_RS14275 WP_004180081.1 3121186..3121647(-) (ssb) [Nitrosospira lacus strain APG3]
MASVNKVILIGNLGKDPETRYMPNGDAVTNITLATTETWKDKNGEKQEKTEWHRVTFYRKLAEIAGEYLKKGRPVYVEGR
LETRKWTDKSGAERYTTEIIASDMKMLGSKPGSGSYEGGDRDESSFAPSTSGSNKPAPRSSTGFDDMDDDIPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=228249 EBAPG3_RS14275 WP_004180081.1 3121186..3121647(-) (ssb) [Nitrosospira lacus strain APG3]
ATGGCATCAGTCAACAAAGTCATACTCATCGGCAATCTCGGTAAAGACCCCGAGACCCGCTACATGCCAAATGGCGACGC
GGTGACCAACATCACTTTGGCAACCACGGAAACATGGAAAGACAAAAACGGTGAAAAGCAGGAGAAAACCGAATGGCATC
GCGTCACGTTTTACCGCAAACTGGCCGAAATCGCCGGTGAATACCTGAAGAAGGGTCGTCCGGTATATGTCGAAGGACGG
CTGGAAACCCGGAAATGGACCGACAAGTCAGGTGCCGAACGCTATACCACCGAGATCATCGCCAGCGACATGAAAATGCT
GGGCAGCAAACCGGGAAGCGGCAGCTACGAGGGGGGTGATAGGGACGAGAGCAGTTTCGCGCCGAGTACCTCCGGCAGCA
ATAAACCTGCCCCAAGAAGCAGCACGGGGTTCGATGACATGGATGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6SSP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.468

100

0.608
  ssb Neisseria meningitidis MC58

50.289

100

0.569
  ssb Neisseria gonorrhoeae MS11

49.133

100

0.556
  ssb Glaesserella parasuis strain SC1401

45

100

0.529

Multiple sequence alignment