Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CAB88_RS28515 Genome accession   NZ_CP021061
Coordinates   5327332..5327853 (-) Length   173 a.a.
NCBI ID   WP_002094213.1    Uniprot ID   A0A9W7QTR5
Organism   Bacillus thuringiensis strain ATCC 10792     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5322332..5332853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAB88_RS28495 (CAB88_28465) rplI 5323542..5323988 (-) 447 WP_000864223.1 50S ribosomal protein L9 -
  CAB88_RS28500 (CAB88_28470) - 5323985..5325958 (-) 1974 WP_001113779.1 DHH family phosphoesterase -
  CAB88_RS28505 (CAB88_28475) - 5326037..5326972 (-) 936 WP_000814844.1 YybS family protein -
  CAB88_RS28510 (CAB88_28480) rpsR 5327053..5327286 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  CAB88_RS28515 (CAB88_28485) ssbA 5327332..5327853 (-) 522 WP_002094213.1 single-stranded DNA-binding protein Machinery gene
  CAB88_RS28520 (CAB88_28490) rpsF 5327880..5328170 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  CAB88_RS28525 (CAB88_28495) ychF 5328362..5329462 (-) 1101 WP_000524670.1 redox-regulated ATPase YchF -
  CAB88_RS28530 (CAB88_28500) - 5329578..5329775 (-) 198 WP_000435486.1 DUF951 domain-containing protein -
  CAB88_RS28535 (CAB88_28505) - 5329796..5330677 (-) 882 WP_000365115.1 mechanosensitive ion channel family protein -
  CAB88_RS28540 (CAB88_28510) yyaC 5330937..5331533 (+) 597 WP_001020708.1 spore protease YyaC -
  CAB88_RS28545 (CAB88_28515) spo0J 5331554..5332405 (-) 852 WP_001051832.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18779.55 Da        Isoelectric Point: 4.9222

>NTDB_id=228095 CAB88_RS28515 WP_002094213.1 5327332..5327853(-) (ssbA) [Bacillus thuringiensis strain ATCC 10792]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=228095 CAB88_RS28515 WP_002094213.1 5327332..5327853(-) (ssbA) [Bacillus thuringiensis strain ATCC 10792]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.813

100

0.387

Multiple sequence alignment