Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MCCS_RS12415 Genome accession   NZ_CP021059
Coordinates   2351470..2351988 (-) Length   172 a.a.
NCBI ID   WP_086043613.1    Uniprot ID   A0A1W7AER1
Organism   Macrococcoides canis strain KM 45013     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2346470..2356988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCCS_RS12390 (MCCS_25380) xpt 2347666..2348250 (-) 585 WP_086043609.1 xanthine phosphoribosyltransferase -
  MCCS_RS12395 (MCCS_25400) - 2348754..2349740 (+) 987 WP_086043610.1 DUF2382 domain-containing protein -
  MCCS_RS12400 (MCCS_25410) - 2349843..2350457 (+) 615 WP_167625987.1 GNAT family N-acetyltransferase -
  MCCS_RS12405 (MCCS_25420) - 2350454..2351011 (-) 558 WP_086043612.1 YfbU family protein -
  MCCS_RS12410 (MCCS_25430) rpsR 2351195..2351437 (-) 243 WP_041636240.1 30S ribosomal protein S18 -
  MCCS_RS12415 (MCCS_25440) ssbA 2351470..2351988 (-) 519 WP_086043613.1 single-stranded DNA-binding protein Machinery gene
  MCCS_RS12420 (MCCS_25450) rpsF 2352013..2352303 (-) 291 WP_086043690.1 30S ribosomal protein S6 -
  MCCS_RS12430 (MCCS_25470) ychF 2352780..2353880 (-) 1101 WP_086043615.1 redox-regulated ATPase YchF -
  MCCS_RS12435 (MCCS_25480) - 2353899..2354087 (-) 189 WP_086043616.1 DUF951 domain-containing protein -
  MCCS_RS12440 (MCCS_25490) - 2354089..2354976 (-) 888 WP_086043617.1 mechanosensitive ion channel family protein -
  MCCS_RS12445 (MCCS_25500) - 2354977..2355840 (-) 864 WP_086043618.1 ParB/RepB/Spo0J family partition protein -
  MCCS_RS12450 (MCCS_25510) - 2355833..2356594 (-) 762 WP_086043619.1 ParA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19028.60 Da        Isoelectric Point: 4.8835

>NTDB_id=228042 MCCS_RS12415 WP_086043613.1 2351470..2351988(-) (ssbA) [Macrococcoides canis strain KM 45013]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQSRSNNPSDDYSSYDQGSYGQTQGQNQNYQASNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=228042 MCCS_RS12415 WP_086043613.1 2351470..2351988(-) (ssbA) [Macrococcoides canis strain KM 45013]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACGAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTCACTTTAGCAGTAAATCGTACATTTACAAATGCCCAAGGAGAACGTCAGGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTCAACAATTTCTTGCACAAAGGTAGCTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGCAGAGTATATGTAACAGAAGTGGTTTGTGATTCAGTTCAATTCCTTGAACCGAAAAA
TGCAAATCAATCACGTTCAAATAATCCGTCTGATGACTATTCAAGCTATGACCAAGGTAGTTATGGTCAGACGCAAGGTC
AGAATCAAAATTATCAAGCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W7AER1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.669

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

53.107

100

0.547
  ssb Vibrio cholerae strain A1552

34.759

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366

Multiple sequence alignment