Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CA207_RS11985 Genome accession   NZ_CP021058
Coordinates   2263595..2264113 (-) Length   172 a.a.
NCBI ID   WP_041636241.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum strain IMD0819     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2258595..2269113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA207_RS11960 (CA207_24950) xpt 2258997..2259581 (-) 585 WP_015912443.1 xanthine phosphoribosyltransferase -
  CA207_RS11965 (CA207_24970) - 2260085..2261104 (+) 1020 WP_086039339.1 DUF2382 domain-containing protein -
  CA207_RS11970 (CA207_24980) - 2261205..2261819 (+) 615 WP_157819693.1 GNAT family N-acetyltransferase -
  CA207_RS11975 (CA207_24990) - 2262100..2263203 (+) 1104 WP_086037824.1 IS30 family transposase -
  CA207_RS11980 (CA207_25000) rpsR 2263320..2263562 (-) 243 WP_041636240.1 30S ribosomal protein S18 -
  CA207_RS11985 (CA207_25010) ssbA 2263595..2264113 (-) 519 WP_041636241.1 single-stranded DNA-binding protein Machinery gene
  CA207_RS11990 (CA207_25020) rpsF 2264138..2264428 (-) 291 WP_041636544.1 30S ribosomal protein S6 -
  CA207_RS11995 (CA207_25030) - 2264565..2264882 (-) 318 WP_041636242.1 hypothetical protein -
  CA207_RS12000 (CA207_25040) ychF 2264906..2266006 (-) 1101 WP_086039341.1 redox-regulated ATPase YchF -
  CA207_RS12005 (CA207_25050) - 2266025..2266213 (-) 189 WP_086039342.1 DUF951 domain-containing protein -
  CA207_RS12010 (CA207_25060) - 2266215..2267102 (-) 888 WP_086039343.1 mechanosensitive ion channel family protein -
  CA207_RS12015 (CA207_25070) - 2267103..2267966 (-) 864 WP_086039344.1 ParB/RepB/Spo0J family partition protein -
  CA207_RS12020 (CA207_25080) - 2267959..2268720 (-) 762 WP_015912450.1 ParA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.61 Da        Isoelectric Point: 4.8835

>NTDB_id=228008 CA207_RS11985 WP_041636241.1 2263595..2264113(-) (ssbA) [Macrococcoides caseolyticum strain IMD0819]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRKVYVTEVVCDSVQFLEPKNTNQSRTNSPSDDYSSYDQGSYGQTQGQNQNYQSSNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=228008 CA207_RS11985 WP_041636241.1 2263595..2264113(-) (ssbA) [Macrococcoides caseolyticum strain IMD0819]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTTACTTTAGCAGTAAATAGAACATTTACTAATGCGCAAGGAGAACGTCAGGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTTAATAATTTCTTGCATAAAGGTAGTTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGTAAAGTATATGTTACTGAGGTCGTTTGTGATTCAGTTCAATTCCTTGAACCGAAGAA
CACTAATCAATCTCGTACAAACAGTCCGTCAGATGACTATTCTAGCTATGACCAAGGAAGTTATGGTCAGACACAAGGCC
AGAATCAAAACTATCAGTCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

53.977

100

0.552
  ssb Vibrio cholerae strain A1552

34.759

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366

Multiple sequence alignment