Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PhaeoP128_RS09415 Genome accession   NZ_CP021047
Coordinates   1966716..1967246 (+) Length   176 a.a.
NCBI ID   WP_024097409.1    Uniprot ID   A0AAC9Z967
Organism   Phaeobacter gallaeciensis strain P128     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1961716..1972246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PhaeoP128_RS09400 (PhaeoP128_01905) - 1962994..1965081 (+) 2088 WP_096706729.1 ABC transporter ATP-binding protein -
  PhaeoP128_RS09405 (PhaeoP128_01906) - 1965128..1965502 (-) 375 WP_024097407.1 hypothetical protein -
  PhaeoP128_RS09410 (PhaeoP128_01907) - 1965787..1966371 (-) 585 WP_024097408.1 lytic transglycosylase domain-containing protein -
  PhaeoP128_RS09415 (PhaeoP128_01908) ssb 1966716..1967246 (+) 531 WP_024097409.1 single-stranded DNA-binding protein Machinery gene
  PhaeoP128_RS09420 (PhaeoP128_01909) - 1967520..1969751 (+) 2232 WP_096706730.1 methyl-accepting chemotaxis protein -
  PhaeoP128_RS09425 (PhaeoP128_01910) aroB 1969899..1971026 (-) 1128 WP_420892509.1 3-dehydroquinate synthase -
  PhaeoP128_RS09430 (PhaeoP128_01911) - 1971040..1971630 (-) 591 WP_024097412.1 shikimate kinase -
  PhaeoP128_RS20865 (PhaeoP128_01912) - 1971712..1971861 (+) 150 WP_024097413.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18264.80 Da        Isoelectric Point: 5.7802

>NTDB_id=227949 PhaeoP128_RS09415 WP_024097409.1 1966716..1967246(+) (ssb) [Phaeobacter gallaeciensis strain P128]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFSEGLVRVAEQYLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEVVLQGIGGTLTMLDGRNDGGQGGGGGSYGGGSGGGYGGGGGGYDSGQGGGNQGGGFGGG
SQGGASHNIDDDEIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=227949 PhaeoP128_RS09415 WP_024097409.1 1966716..1967246(+) (ssb) [Phaeobacter gallaeciensis strain P128]
ATGGCAGGCTCAGTCAACAAAGTAATCCTGATCGGCAACCTCGGCCGTGATCCCGAGGTGCGCAGCTTCCAGAACGGCGG
CAAGGTCTGCAACCTGCGGATCGCCACCTCGGAAACCTGGAAAGACCGCAACACCGGCGAGCGGCGCGAAAAAACCGAAT
GGCATTCGGTTGCGATCTTCTCCGAAGGTCTGGTCCGCGTCGCCGAGCAATATCTGCGCAAAGGCTCCAAGGTCTACATC
GAAGGCCAGTTGCAGACCCGGAAATGGCAGGACCAGAGCGGCCAGGACCGCTATTCAACCGAAGTCGTCCTGCAGGGAAT
CGGCGGCACGCTGACCATGCTTGATGGGCGCAATGACGGCGGCCAGGGCGGCGGCGGTGGCAGCTACGGTGGTGGCAGCG
GCGGCGGCTATGGTGGCGGCGGTGGTGGCTACGACAGCGGCCAGGGCGGCGGTAATCAGGGCGGTGGATTTGGCGGTGGC
AGTCAGGGCGGCGCCTCGCACAACATTGACGATGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.757

98.295

0.528
  ssb Glaesserella parasuis strain SC1401

46.875

100

0.511
  ssb Neisseria meningitidis MC58

40.642

100

0.432
  ssb Neisseria gonorrhoeae MS11

40.642

100

0.432

Multiple sequence alignment