Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XppCFBP6982P_RS16625 Genome accession   NZ_CP020975
Coordinates   3873112..3874170 (-) Length   352 a.a.
NCBI ID   WP_011348458.1    Uniprot ID   -
Organism   Xanthomonas phaseoli pv. phaseoli strain CFBP6982     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3874192..3889033 3873112..3874170 flank 22


Gene organization within MGE regions


Location: 3873112..3889033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XppCFBP6982P_RS16625 (XppCFBP6982P_05870) comM 3873112..3874170 (-) 1059 WP_011348458.1 pilus assembly protein PilM Machinery gene
  XppCFBP6982P_RS16630 (XppCFBP6982P_05875) - 3874383..3876809 (+) 2427 WP_033473311.1 penicillin-binding protein 1A -
  XppCFBP6982P_RS16635 (XppCFBP6982P_05880) - 3877128..3877778 (+) 651 WP_017156871.1 hypothetical protein -
  XppCFBP6982P_RS16640 (XppCFBP6982P_05885) - 3878080..3879369 (-) 1290 WP_003486167.1 citrate synthase -
  XppCFBP6982P_RS16645 (XppCFBP6982P_05890) - 3879599..3879841 (-) 243 WP_005911911.1 type B 50S ribosomal protein L31 -
  XppCFBP6982P_RS16650 (XppCFBP6982P_05895) - 3879913..3880851 (-) 939 WP_017156868.1 nucleoside hydrolase -
  XppCFBP6982P_RS16655 (XppCFBP6982P_05900) recG 3880990..3883143 (-) 2154 WP_039572040.1 ATP-dependent DNA helicase RecG -
  XppCFBP6982P_RS16660 (XppCFBP6982P_05905) - 3883164..3883544 (-) 381 WP_005911914.1 RidA family protein -
  XppCFBP6982P_RS16665 (XppCFBP6982P_05910) - 3883624..3885795 (-) 2172 WP_008575831.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  XppCFBP6982P_RS16670 (XppCFBP6982P_05915) rpoZ 3885924..3886223 (-) 300 WP_002812428.1 DNA-directed RNA polymerase subunit omega -
  XppCFBP6982P_RS16675 (XppCFBP6982P_05920) gmk 3886488..3887099 (-) 612 WP_005996765.1 guanylate kinase -
  XppCFBP6982P_RS16680 (XppCFBP6982P_05925) - 3887251..3888111 (-) 861 WP_039572035.1 YicC/YloC family endoribonuclease -
  XppCFBP6982P_RS16685 (XppCFBP6982P_05930) rph 3888221..3888946 (+) 726 WP_039572031.1 ribonuclease PH -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37606.21 Da        Isoelectric Point: 4.3924

>NTDB_id=227589 XppCFBP6982P_RS16625 WP_011348458.1 3873112..3874170(-) (comM) [Xanthomonas phaseoli pv. phaseoli strain CFBP6982]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=227589 XppCFBP6982P_RS16625 WP_011348458.1 3873112..3874170(-) (comM) [Xanthomonas phaseoli pv. phaseoli strain CFBP6982]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCT
GTAGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTATCCGATCGAGGAAGTAAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAACA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGCTTGACCGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGCACTGGTTGCCAGCGAATTGCCGGT
GGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACACTGAGCGTGCTGCGCTCCGGCCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAATTTAACCGCGTCGATTGCATCGTGCTGGCCGGCG
GTTGCGCTGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAAGTCCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCTTTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment