Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   XppCFBP6164P_RS14530 Genome accession   NZ_CP020967
Coordinates   3345257..3345784 (-) Length   175 a.a.
NCBI ID   WP_099770622.1    Uniprot ID   A0A3T0G0H7
Organism   Xanthomonas phaseoli pv. phaseoli strain CFBP6164     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3343923..3356556 3345257..3345784 within 0


Gene organization within MGE regions


Location: 3343923..3356556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XppCFBP6164P_RS14530 (XppCFBP6164P_03465) ssb 3345257..3345784 (-) 528 WP_099770622.1 single-stranded DNA-binding protein Machinery gene
  XppCFBP6164P_RS14535 (XppCFBP6164P_03470) - 3346060..3347058 (+) 999 WP_017157215.1 polyprenyl synthetase family protein -
  XppCFBP6164P_RS14540 (XppCFBP6164P_03475) - 3347261..3348061 (-) 801 WP_039573859.1 dienelactone hydrolase family protein -
  XppCFBP6164P_RS14545 (XppCFBP6164P_03480) murD 3348374..3349780 (-) 1407 WP_039573857.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  XppCFBP6164P_RS14550 (XppCFBP6164P_03485) murL 3349761..3351116 (-) 1356 WP_039573856.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  XppCFBP6164P_RS14555 (XppCFBP6164P_03490) - 3351113..3351571 (-) 459 WP_039573853.1 hypothetical protein -
  XppCFBP6164P_RS14560 (XppCFBP6164P_03495) - 3351555..3354164 (-) 2610 WP_039573850.1 bifunctional aspartate kinase/diaminopimelate decarboxylase -
  XppCFBP6164P_RS14565 (XppCFBP6164P_03500) - 3354348..3355226 (+) 879 WP_039573847.1 PhzF family phenazine biosynthesis protein -
  XppCFBP6164P_RS14570 (XppCFBP6164P_03505) - 3355258..3356139 (+) 882 WP_039573843.1 PhzF family phenazine biosynthesis protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18800.64 Da        Isoelectric Point: 5.3095

>NTDB_id=227544 XppCFBP6164P_RS14530 WP_099770622.1 3345257..3345784(-) (ssb) [Xanthomonas phaseoli pv. phaseoli strain CFBP6164]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSASRQQGGGGGQGGGYGGGGQDYAPRRQQPAQQQ
SAPPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=227544 XppCFBP6164P_RS14530 WP_099770622.1 3345257..3345784(-) (ssb) [Xanthomonas phaseoli pv. phaseoli strain CFBP6164]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGATACCAAATACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGTACCGAGTGGC
ACCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATTGCCGGCGAATACCTGCGCAAGGGGTCGCAGGTCTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGGGGCGGGATGGGCGGCGATCGCCCGCAGCGCTCGGCATCGCGTCAGCAGGGCG
GCGGCGGTGGGCAGGGCGGTGGATACGGTGGCGGTGGGCAGGACTATGCGCCGCGCCGTCAGCAGCCGGCCCAGCAACAG
TCGGCACCGCCGATGGACGATTTCGCCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T0G0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.33

100

0.491
  ssb Glaesserella parasuis strain SC1401

45.902

100

0.48
  ssb Neisseria meningitidis MC58

42.391

100

0.446
  ssb Neisseria gonorrhoeae MS11

42.391

100

0.446

Multiple sequence alignment