Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XppCFBP412P_RS16480 Genome accession   NZ_CP020964
Coordinates   3829576..3830634 (-) Length   352 a.a.
NCBI ID   WP_011348458.1    Uniprot ID   -
Organism   Xanthomonas phaseoli pv. phaseoli strain CFBP412     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3823323..3834977 3829576..3830634 within 0
IScluster/Tn 3827403..3834660 3829576..3830634 within 0


Gene organization within MGE regions


Location: 3823323..3834977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XppCFBP412P_RS16450 (XppCFBP412P_13430) - 3823418..3824380 (-) 963 WP_039572054.1 DUF58 domain-containing protein -
  XppCFBP412P_RS16455 (XppCFBP412P_13435) - 3824401..3825420 (-) 1020 WP_039572050.1 MoxR family ATPase -
  XppCFBP412P_RS16460 (XppCFBP412P_13440) - 3825678..3827582 (-) 1905 WP_017158935.1 type IV pilus secretin PilQ family protein -
  XppCFBP412P_RS16465 (XppCFBP412P_13445) - 3827602..3828135 (-) 534 WP_007974439.1 pilus assembly protein PilP -
  XppCFBP412P_RS16470 (XppCFBP412P_13450) - 3828132..3828797 (-) 666 WP_039572047.1 type 4a pilus biogenesis protein PilO -
  XppCFBP412P_RS16475 (XppCFBP412P_13455) - 3828794..3829576 (-) 783 WP_017156874.1 PilN domain-containing protein -
  XppCFBP412P_RS16480 (XppCFBP412P_13460) comM 3829576..3830634 (-) 1059 WP_011348458.1 pilus assembly protein PilM Machinery gene
  XppCFBP412P_RS16485 (XppCFBP412P_13465) - 3830847..3833273 (+) 2427 WP_033473311.1 penicillin-binding protein 1A -
  XppCFBP412P_RS16490 (XppCFBP412P_13470) - 3833592..3834242 (+) 651 WP_017156871.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37606.21 Da        Isoelectric Point: 4.3924

>NTDB_id=227535 XppCFBP412P_RS16480 WP_011348458.1 3829576..3830634(-) (comM) [Xanthomonas phaseoli pv. phaseoli strain CFBP412]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=227535 XppCFBP412P_RS16480 WP_011348458.1 3829576..3830634(-) (comM) [Xanthomonas phaseoli pv. phaseoli strain CFBP412]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCT
GTAGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTATCCGATCGAGGAAGTAAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAACA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGCTTGACCGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGCACTGGTTGCCAGCGAATTGCCGGT
GGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACACTGAGCGTGCTGCGCTCCGGCCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAATTTAACCGCGTCGATTGCATCGTGCTGGCCGGCG
GTTGCGCTGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAAGTCCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCTTTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment