Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHEC894_RS10725 Genome accession   NZ_CP020947
Coordinates   2158304..2158819 (+) Length   171 a.a.
NCBI ID   WP_004671899.1    Uniprot ID   A0A1C3XWR3
Organism   Rhizobium sp. CIAT894     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2153304..2163819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHEC894_RS10710 (RHEC894_CH02141) - 2153811..2154617 (-) 807 WP_085737245.1 DUF72 domain-containing protein -
  RHEC894_RS10715 (RHEC894_CH02142) - 2154642..2155103 (-) 462 WP_085737246.1 GNAT family N-acetyltransferase -
  RHEC894_RS10720 (RHEC894_CH02143) uvrA 2155100..2158021 (-) 2922 WP_085737247.1 excinuclease ABC subunit UvrA -
  RHEC894_RS10725 (RHEC894_CH02144) ssb 2158304..2158819 (+) 516 WP_004671899.1 single-stranded DNA-binding protein Machinery gene
  RHEC894_RS10730 - 2158981..2159256 (+) 276 WP_085737248.1 hypothetical protein -
  RHEC894_RS10735 (RHEC894_CH02145) - 2159291..2160562 (+) 1272 WP_085737249.1 abortive infection family protein -
  RHEC894_RS10740 (RHEC894_CH02146) - 2160908..2161303 (+) 396 WP_085737250.1 hypothetical protein -
  RHEC894_RS10745 (RHEC894_CH02147) - 2161476..2162123 (-) 648 WP_085737251.1 MarC family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18406.10 Da        Isoelectric Point: 5.3093

>NTDB_id=227329 RHEC894_RS10725 WP_004671899.1 2158304..2158819(+) (ssb) [Rhizobium sp. CIAT894]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFSSTLTMLDGRGDGGGASSGFGGGRGGSSNNDYGDDYGAPAPSSSPSRGGGGGN
FSRDLDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=227329 RHEC894_RS10725 WP_004671899.1 2158304..2158819(+) (ssb) [Rhizobium sp. CIAT894]
ATGGCTGGTAGCGTGAATAAGGTAATTCTGGTTGGAAACGTGGGTGCAGACCCCGAAATCCGCCGTACTCAGGATGGCCG
GCCGATCGCCAATCTTCGCATCGCGACCTCGGAGACCTGGCGCGACCGAAATTCCGGCGAGCGCCGTGAAAAGACCGAAT
GGCACACCGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGTTGCAGACCCGCAAGTGGCAGGACCAGCAGGGCCAGGACCGCTACTCGACAGAAGTGGTGCTGCAGGGCTT
CAGCTCGACGCTGACGATGCTCGACGGCCGCGGCGATGGCGGCGGCGCAAGCTCCGGCTTCGGCGGCGGCCGTGGCGGCA
GCAGCAACAATGACTACGGCGACGATTACGGCGCCCCGGCTCCCTCCTCATCGCCGAGCCGCGGCGGTGGCGGCGGCAAC
TTCTCGCGCGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3XWR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.571

100

0.497
  ssb Glaesserella parasuis strain SC1401

44.681

100

0.491
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.398
  ssb Neisseria meningitidis MC58

37.778

100

0.398

Multiple sequence alignment