Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MARSALSMR5_RS17235 Genome accession   NZ_CP020931
Coordinates   3775544..3776071 (-) Length   175 a.a.
NCBI ID   WP_075195655.1    Uniprot ID   A0A1W6KDL5
Organism   Marinobacter salarius strain SMR5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3770544..3781071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MARSALSMR5_RS17210 (MARSALSMR5_03497) mshL 3771129..3772865 (-) 1737 WP_036203391.1 pilus (MSHA type) biogenesis protein MshL -
  MARSALSMR5_RS17215 (MARSALSMR5_03498) - 3772862..3773173 (-) 312 WP_085681645.1 hypothetical protein -
  MARSALSMR5_RS17220 (MARSALSMR5_03499) gspM 3773175..3773873 (-) 699 WP_036203381.1 type II secretion system protein GspM -
  MARSALSMR5_RS17225 (MARSALSMR5_03500) - 3773870..3774478 (-) 609 WP_036203379.1 PilN domain-containing protein -
  MARSALSMR5_RS17230 (MARSALSMR5_03501) - 3774475..3775383 (-) 909 WP_085681646.1 biogenesis protein MshI -
  MARSALSMR5_RS17235 (MARSALSMR5_03502) ssb 3775544..3776071 (-) 528 WP_075195655.1 single-stranded DNA-binding protein Machinery gene
  MARSALSMR5_RS17240 (MARSALSMR5_03503) - 3776130..3777500 (-) 1371 WP_036203361.1 MFS transporter -
  MARSALSMR5_RS17245 (MARSALSMR5_03504) uvrA 3777696..3780527 (+) 2832 WP_085681647.1 excinuclease ABC subunit UvrA -
  MARSALSMR5_RS17250 (MARSALSMR5_03505) rplQ 3780601..3780999 (-) 399 WP_007153989.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18683.68 Da        Isoelectric Point: 4.9464

>NTDB_id=227251 MARSALSMR5_RS17235 WP_075195655.1 3775544..3776071(-) (ssb) [Marinobacter salarius strain SMR5]
MARGVNKVILIGNLGQDPETRYTPNGNAVVNLNLATDESYKDRQTGQLVPKTEWHRIVMFGKIAEVAGQYLRKGSKVYIE
GKLQTRKWQGQDGQDRYTTEVVVDINGQMQMLDSRGGEGGGMSQGAPAGRPQQAGNAAPAAAGPSGQQSGGGGYSQPSQG
SMPEPVDDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=227251 MARSALSMR5_RS17235 WP_075195655.1 3775544..3776071(-) (ssb) [Marinobacter salarius strain SMR5]
ATGGCACGAGGCGTAAACAAGGTTATTCTGATTGGGAATCTGGGGCAGGACCCGGAAACCCGCTATACCCCGAATGGCAA
TGCGGTGGTGAACCTCAACCTTGCAACCGATGAAAGTTACAAGGACAGGCAAACAGGCCAGTTGGTACCGAAAACCGAGT
GGCACCGGATTGTGATGTTCGGCAAGATTGCCGAGGTGGCTGGTCAGTACCTGCGTAAGGGCTCAAAGGTCTACATCGAG
GGTAAGTTACAGACGCGCAAGTGGCAGGGGCAGGATGGTCAGGATCGCTACACCACCGAGGTAGTGGTAGACATCAACGG
CCAGATGCAGATGCTCGACAGTCGTGGTGGCGAAGGCGGCGGCATGAGCCAAGGTGCTCCCGCTGGCCGTCCGCAGCAGG
CGGGCAATGCCGCGCCAGCCGCCGCGGGCCCGTCTGGGCAGCAATCCGGAGGCGGGGGCTACAGTCAGCCGTCACAAGGC
AGCATGCCGGAACCGGTTGATGACTTCGACGACGACATACCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6KDL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.016

100

0.617
  ssb Glaesserella parasuis strain SC1401

52.747

100

0.549
  ssb Neisseria gonorrhoeae MS11

48.889

100

0.503
  ssb Neisseria meningitidis MC58

45.81

100

0.469

Multiple sequence alignment