Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   B9L64_RS13125 Genome accession   NZ_CP020915
Coordinates   2557585..2558103 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain 50-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2552585..2563103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS13095 yyaJ 2553089..2554444 (+) 1356 WP_048654832.1 MFS transporter -
  B9L64_RS13100 maa 2554478..2555032 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  B9L64_RS13105 yyaH 2555050..2555430 (-) 381 WP_048654831.1 VOC family protein -
  B9L64_RS13110 ccpB 2555486..2556421 (-) 936 WP_048654830.1 transcriptional regulator CcpB -
  B9L64_RS13115 xth 2556480..2557238 (-) 759 WP_029726087.1 exodeoxyribonuclease III -
  B9L64_RS13120 rpsR 2557302..2557541 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  B9L64_RS13125 ssbA 2557585..2558103 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  B9L64_RS13130 rpsF 2558144..2558431 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  B9L64_RS13135 ychF 2558542..2559642 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  B9L64_RS13140 yyaE 2559769..2561772 (-) 2004 WP_029726086.1 molybdopterin-dependent oxidoreductase -
  B9L64_RS13145 yyzM 2561823..2562029 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=227095 B9L64_RS13125 WP_003219228.1 2557585..2558103(-) (ssbA) [Bacillus subtilis strain 50-1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=227095 B9L64_RS13125 WP_003219228.1 2557585..2558103(-) (ssbA) [Bacillus subtilis strain 50-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment