Detailed information NTG0226933

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: B9K09_RS13235
• Genome accession: NZ_CP020892
• Coordinates: 2878796..2881006 (-)
• Length: 736 a.a.
• NCBI ID: WP_087519093.1
• Uniprot ID: A0A1Y0KZ11
• Organism: Pseudomonas sp. M30-35
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2873796..2886006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B9K09_RS13200 (B9K09_13195)	murB	2874161..2875180 (-)	1020	WP_087517257.1	UDP-N-acetylmuramate dehydrogenase	-
B9K09_RS13205 (B9K09_13200)	-	2875177..2875641 (-)	465	WP_087517258.1	low molecular weight protein-tyrosine-phosphatase	-
B9K09_RS13210 (B9K09_13205)	kdsB	2875641..2876405 (-)	765	WP_087517259.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
B9K09_RS13215 (B9K09_13210)	-	2876406..2876591 (-)	186	WP_087517260.1	Trm112 family protein	-
B9K09_RS13220 (B9K09_13215)	lpxK	2876651..2877652 (-)	1002	WP_087517261.1	tetraacyldisaccharide 4'-kinase	-
B9K09_RS13225 (B9K09_13220)	-	2877666..2878094 (-)	429	WP_087517262.1	biopolymer transporter ExbD	-
B9K09_RS13230 (B9K09_13225)	exbB	2878091..2878723 (-)	633	WP_087517263.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
B9K09_RS13235 (B9K09_13230)	comA	2878796..2881006 (-)	2211	WP_087519093.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
B9K09_RS13240 (B9K09_13235)	-	2881154..2881684 (+)	531	WP_087517264.1	DUF2062 domain-containing protein	-
B9K09_RS13245 (B9K09_13240)	arsJ	2881868..2883085 (-)	1218	WP_087517265.1	organoarsenical effux MFS transporter ArsJ	-
B9K09_RS13250 (B9K09_13245)	-	2883095..2884099 (-)	1005	WP_087517266.1	ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase	-
B9K09_RS13255 (B9K09_13250)	arsH	2884150..2884866 (-)	717	WP_087517267.1	arsenical resistance protein ArsH	-
B9K09_RS13260 (B9K09_13255)	arsB	2884877..2885932 (-)	1056	WP_087517268.1	ACR3 family arsenite efflux transporter	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79816.21 Da
• Isoelectric Point: 10.0140

>NTDB_id=226933 B9K09_RS13235 WP_087519093.1 2878796..2881006(-) (comA) [Pseudomonas sp. M30-35]
MLALIAGLLTLRFLPQLPSIWFLVLCLLGAWLLVLRQRLPPALFLLGFAWACLCAQWALDDRLSPQLDGRTLWLQGEVVG
LPEQDGKVGRFHLAGAVSRRAALPKLLRLSWYGGPPVVAGETWRLAVRLKRPHALVNPQSFDYELWLLAQGIGGTGSIKA
GERISVDGGIATWRQRIRQRILATPAYGREGALTALVLGDGSGMSTDDWRILQHTGTVHLMVISGQHIGLLAGLLYGLVA
ALARFGYWPAALPWLPCACLSGFAGAITYGALAGFEVPVQRACVMVGLVLLWRWRFRHLGLLMPLLLAMLLILLWQPLAS
LQPGFWLSFGAAGLLMLVFRGRLGGLSWWRSLGRAQWAMALGLLPLLLGLGLPVSMSGPLVNLVAVPLVGLVIVPLALLG
TLLLPLPWLGATLLGIAGGLLELLFRGLEFAAQWLPAWLPSGLPLWAWLLVAIALLLLILPRGIPGRSLAWLLLLPLLFT
KPPRPPEGQALVVMFDVGQGSSILVQTREHALLYDAGARSAGFDIGERVVLPSLRTLGLSSLDMLLISHADNDHSGGALA
IYQGMSIERVVSGQPTELPAVLGAQPCRPSSWQWDQVRFSTWQWQDASQSNPLSCVLMVEAAGERLLLTGDIDAAAERAL
VRSGTDVRAQWLLAPHHGSRSSSSQLFIDAVAADSVLIGRGKHNAYGHPHPAVVQRYRQSGATLYDSVEEGAVTIQLGSF
VPAQGMRKIPRFWREK

Nucleotide

• Length: 2211 bp

>NTDB_id=226933 B9K09_RS13235 WP_087519093.1 2878796..2881006(-) (comA) [Pseudomonas sp. M30-35]
ATGTTAGCGCTGATTGCGGGTCTACTCACGTTAAGGTTTTTACCTCAGTTACCTTCCATATGGTTTTTGGTCCTGTGTTT
GCTGGGCGCATGGCTGTTGGTTTTGCGTCAGCGGTTGCCGCCAGCCTTATTCCTGCTGGGCTTCGCTTGGGCTTGTCTCT
GCGCACAATGGGCGCTTGATGACCGGTTGAGCCCGCAATTAGACGGTCGAACCCTGTGGCTGCAAGGCGAGGTCGTTGGC
CTACCTGAACAAGACGGCAAGGTTGGACGTTTTCATCTGGCGGGTGCTGTGTCGCGTCGCGCCGCTTTGCCCAAGCTGCT
GCGTTTATCCTGGTACGGTGGGCCACCAGTTGTAGCCGGCGAAACCTGGCGCCTGGCGGTGCGCCTAAAAAGACCGCATG
CGCTGGTGAATCCGCAGTCGTTCGATTATGAACTGTGGTTGCTCGCTCAAGGTATTGGTGGCACCGGTAGCATTAAAGCC
GGTGAGCGCATCAGTGTTGACGGGGGTATTGCAACCTGGCGTCAACGAATTCGCCAACGCATTCTGGCAACGCCTGCGTA
CGGCCGTGAAGGGGCTTTGACTGCCTTGGTATTGGGTGATGGCTCGGGCATGAGCACTGATGATTGGCGCATCTTGCAGC
ACACCGGCACCGTTCACTTGATGGTTATATCTGGTCAGCACATTGGTCTGCTGGCAGGGTTGCTCTATGGTTTGGTTGCA
GCTCTGGCGAGGTTTGGCTACTGGCCAGCGGCTTTGCCCTGGCTGCCTTGTGCCTGTTTGTCCGGCTTCGCTGGCGCTAT
TACCTATGGCGCGCTCGCAGGCTTTGAGGTGCCGGTGCAGCGCGCTTGTGTGATGGTTGGTTTGGTATTGCTTTGGCGCT
GGCGCTTTCGTCATCTAGGGCTGCTAATGCCGCTATTGTTGGCGATGCTGCTGATACTGTTGTGGCAACCACTTGCCAGC
TTGCAGCCCGGTTTTTGGCTGTCATTTGGTGCCGCGGGCTTACTTATGCTGGTATTTCGCGGGCGCCTCGGCGGCTTGAG
TTGGTGGCGCTCTCTGGGGCGCGCGCAATGGGCGATGGCCTTGGGGTTATTGCCACTGCTGCTGGGCTTGGGGTTGCCGG
TCAGCATGAGTGGACCGTTGGTCAATTTAGTCGCTGTACCGCTAGTTGGGTTGGTGATTGTGCCGCTGGCATTGCTTGGT
ACTTTGTTGTTGCCGCTGCCATGGCTAGGTGCAACGCTGCTCGGTATTGCTGGCGGCCTGCTTGAGCTGCTGTTCAGGGG
GCTGGAGTTTGCAGCCCAATGGCTACCCGCATGGTTACCGTCAGGTTTACCACTGTGGGCCTGGTTGCTGGTGGCAATAG
CGCTGTTGCTACTGATACTGCCGCGGGGTATTCCAGGACGAAGTTTAGCGTGGCTATTATTGCTGCCGTTGCTATTCACC
AAGCCCCCGCGGCCGCCTGAAGGGCAGGCTCTGGTGGTGATGTTCGATGTGGGGCAGGGCTCATCGATATTGGTGCAAAC
CCGTGAGCATGCGCTGTTGTACGATGCTGGTGCGCGCTCTGCGGGGTTTGATATTGGCGAGAGAGTGGTTTTACCGTCCC
TGCGAACGCTAGGGCTGAGCTCTCTGGATATGCTACTGATTAGCCATGCAGATAATGATCACAGCGGTGGCGCATTGGCT
ATCTATCAAGGCATGTCGATTGAGCGAGTCGTAAGCGGTCAACCGACAGAGTTGCCAGCTGTACTCGGGGCTCAGCCCTG
CCGACCATCCAGTTGGCAGTGGGATCAGGTGCGATTCAGCACTTGGCAGTGGCAAGACGCCAGCCAATCAAACCCGCTGT
CCTGCGTATTAATGGTTGAGGCTGCGGGCGAGCGGCTACTGCTAACCGGTGATATTGACGCCGCGGCTGAGCGTGCATTG
GTGCGCAGCGGGACGGATGTGCGTGCGCAATGGTTGTTAGCGCCGCACCACGGCAGCCGTAGTTCTTCTTCACAGCTGTT
TATTGATGCAGTCGCCGCCGATTCGGTATTGATTGGGCGGGGCAAGCACAACGCCTATGGTCATCCGCATCCAGCTGTTG
TGCAGCGCTATCGGCAATCTGGCGCCACGCTCTACGACAGTGTGGAGGAGGGCGCGGTGACGATTCAGCTAGGTTCTTTT
GTACCAGCGCAAGGAATGCGAAAAATACCGCGATTTTGGCGAGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (19-163)

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-671)

• Competence protein (Competence) (196-461)

3D structure

• AlphaFold DB: A0A1Y0KZ11

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.04	97.418	0.614
comA	Ralstonia pseudosolanacearum GMI1000	33.333	100	0.378