Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   B9K09_RS13230 Genome accession   NZ_CP020892
Coordinates   2878091..2878723 (-) Length   210 a.a.
NCBI ID   WP_087517263.1    Uniprot ID   A0A1Y0KTS5
Organism   Pseudomonas sp. M30-35     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2873091..2883723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9K09_RS13200 (B9K09_13195) murB 2874161..2875180 (-) 1020 WP_087517257.1 UDP-N-acetylmuramate dehydrogenase -
  B9K09_RS13205 (B9K09_13200) - 2875177..2875641 (-) 465 WP_087517258.1 low molecular weight protein-tyrosine-phosphatase -
  B9K09_RS13210 (B9K09_13205) kdsB 2875641..2876405 (-) 765 WP_087517259.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  B9K09_RS13215 (B9K09_13210) - 2876406..2876591 (-) 186 WP_087517260.1 Trm112 family protein -
  B9K09_RS13220 (B9K09_13215) lpxK 2876651..2877652 (-) 1002 WP_087517261.1 tetraacyldisaccharide 4'-kinase -
  B9K09_RS13225 (B9K09_13220) - 2877666..2878094 (-) 429 WP_087517262.1 biopolymer transporter ExbD -
  B9K09_RS13230 (B9K09_13225) exbB 2878091..2878723 (-) 633 WP_087517263.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B9K09_RS13235 (B9K09_13230) comA 2878796..2881006 (-) 2211 WP_087519093.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B9K09_RS13240 (B9K09_13235) - 2881154..2881684 (+) 531 WP_087517264.1 DUF2062 domain-containing protein -
  B9K09_RS13245 (B9K09_13240) arsJ 2881868..2883085 (-) 1218 WP_087517265.1 organoarsenical effux MFS transporter ArsJ -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22668.92 Da        Isoelectric Point: 7.8825

>NTDB_id=226932 B9K09_RS13230 WP_087517263.1 2878091..2878723(-) (exbB) [Pseudomonas sp. M30-35]
MLELVKAGGWIMLPIILCSIVAAAIVAERLWTLRPSRVTPPNLLSKVWQWIKDKKLNNQKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVVHDMERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGAGMANAPVLAGGIAKALITTAA
GLIVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEVVQGDREVDLGGDKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=226932 B9K09_RS13230 WP_087517263.1 2878091..2878723(-) (exbB) [Pseudomonas sp. M30-35]
GTGTTGGAATTGGTTAAAGCTGGCGGCTGGATCATGCTGCCGATTATCTTGTGTTCTATCGTTGCGGCAGCAATTGTTGC
TGAGCGCTTATGGACGTTGCGACCTAGCCGCGTCACCCCGCCAAACCTGTTGAGTAAGGTCTGGCAATGGATCAAAGACA
AAAAACTTAACAATCAAAAACTCAAAGAGCTGCGGGCTGATTCGCCACTCGGTGAGATTTTGGCTGCGGGTTTGGCTAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCGGCAGCTCGTGTCGTGCACGACATGGAGCGTTATCT
CAACGCACTTGGCACCATCGCCGGGATCGCACCGCTGCTCGGTTTGCTCGGTACAGTGCTCGGCATGATCGAGATTTTCA
GTTCGTTCATGGGCGCTGGAATGGCTAATGCCCCGGTGCTGGCTGGCGGTATTGCCAAGGCTCTGATTACCACTGCTGCG
GGTTTGATCGTGGCAATTCCTGCGCTGTTCTTCCATCGTTACCTGCAGCGTCGGGTTGACGAGTTGGTGGTTGGCATGGA
GCAGGAAGCAATCAAACTGGTTGAGGTGGTGCAGGGCGACCGCGAAGTTGATCTGGGTGGAGATAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0KTS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

88.095

100

0.881

Multiple sequence alignment