Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   B7L66_RS04405 Genome accession   NZ_CP020885
Coordinates   947543..947662 (+) Length   39 a.a.
NCBI ID   WP_005915819.1    Uniprot ID   A0A7S6YV99
Organism   Xanthomonas citri pv. citri strain TX160149     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 947891..966936 947543..947662 flank 229


Gene organization within MGE regions


Location: 947543..966936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L66_RS04405 (B7L66_04395) pilB 947543..947662 (+) 120 WP_005915819.1 hypothetical protein Machinery gene
  B7L66_RS04410 (B7L66_04400) - 947794..947961 (+) 168 WP_015463523.1 hypothetical protein -
  B7L66_RS04415 (B7L66_04405) pilR 948220..949614 (-) 1395 WP_005930970.1 sigma-54 dependent transcriptional regulator Regulator
  B7L66_RS04420 (B7L66_04410) - 949939..951552 (-) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -
  B7L66_RS04425 (B7L66_04415) sucC 951784..952953 (+) 1170 WP_005915812.1 ADP-forming succinate--CoA ligase subunit beta -
  B7L66_RS04430 (B7L66_04420) sucD 952978..953853 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  B7L66_RS26755 - 953973..954122 (-) 150 WP_157380096.1 hypothetical protein -
  B7L66_RS26760 - 954572..955090 (-) 519 Protein_829 IS1595 family transposase -
  B7L66_RS27140 - 955380..955526 (-) 147 Protein_830 DDE transposase -
  B7L66_RS04445 (B7L66_04435) - 955754..956038 (-) 285 WP_235652377.1 hypothetical protein -
  B7L66_RS04450 (B7L66_04440) - 956143..956949 (+) 807 WP_015463520.1 hypothetical protein -
  B7L66_RS04455 (B7L66_04445) xopAI 957369..958259 (-) 891 WP_011052119.1 type III secretion system effector XopAI -
  B7L66_RS04460 (B7L66_04450) - 958393..959490 (-) 1098 WP_088016277.1 DNA-binding protein -
  B7L66_RS04470 (B7L66_04460) - 959683..960956 (+) 1274 Protein_835 site-specific integrase -
  B7L66_RS04475 (B7L66_04465) - 960965..963955 (+) 2991 WP_088016278.1 Tn3-like element TnXax1 family transposase -
  B7L66_RS04480 (B7L66_04470) - 964088..965365 (+) 1278 WP_088016279.1 lytic murein transglycosylase -
  B7L66_RS04485 (B7L66_04475) avrXacE2 965450..966520 (+) 1071 WP_011052114.1 type III secretion system effector avirulence protein AvrXacE2 -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4178.84 Da        Isoelectric Point: 9.0113

>NTDB_id=226891 B7L66_RS04405 WP_005915819.1 947543..947662(+) (pilB) [Xanthomonas citri pv. citri strain TX160149]
MQIAEAAQAIGIRDLRQSALMKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=226891 B7L66_RS04405 WP_005915819.1 947543..947662(+) (pilB) [Xanthomonas citri pv. citri strain TX160149]
ATGCAGATCGCCGAGGCCGCACAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATGAAGGCTGCGCACGGGGT
GACCAGCCTGGCGGAGATCAATCGTGTGACGAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6YV99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

51.282

100

0.513
  pilB Acinetobacter baumannii D1279779

48.718

100

0.487
  pilB Vibrio cholerae strain A1552

45.714

89.744

0.41
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385

Multiple sequence alignment