Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   B7L66_RS04415 Genome accession   NZ_CP020885
Coordinates   948220..949614 (-) Length   464 a.a.
NCBI ID   WP_005930970.1    Uniprot ID   A0A0U5FKR9
Organism   Xanthomonas citri pv. citri strain TX160149     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 947891..966936 948220..949614 within 0


Gene organization within MGE regions


Location: 947891..966936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L66_RS04415 (B7L66_04405) pilR 948220..949614 (-) 1395 WP_005930970.1 sigma-54 dependent transcriptional regulator Regulator
  B7L66_RS04420 (B7L66_04410) - 949939..951552 (-) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -
  B7L66_RS04425 (B7L66_04415) sucC 951784..952953 (+) 1170 WP_005915812.1 ADP-forming succinate--CoA ligase subunit beta -
  B7L66_RS04430 (B7L66_04420) sucD 952978..953853 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  B7L66_RS26755 - 953973..954122 (-) 150 WP_157380096.1 hypothetical protein -
  B7L66_RS26760 - 954572..955090 (-) 519 Protein_829 IS1595 family transposase -
  B7L66_RS27140 - 955380..955526 (-) 147 Protein_830 DDE transposase -
  B7L66_RS04445 (B7L66_04435) - 955754..956038 (-) 285 WP_235652377.1 hypothetical protein -
  B7L66_RS04450 (B7L66_04440) - 956143..956949 (+) 807 WP_015463520.1 hypothetical protein -
  B7L66_RS04455 (B7L66_04445) xopAI 957369..958259 (-) 891 WP_011052119.1 type III secretion system effector XopAI -
  B7L66_RS04460 (B7L66_04450) - 958393..959490 (-) 1098 WP_088016277.1 DNA-binding protein -
  B7L66_RS04470 (B7L66_04460) - 959683..960956 (+) 1274 Protein_835 site-specific integrase -
  B7L66_RS04475 (B7L66_04465) - 960965..963955 (+) 2991 WP_088016278.1 Tn3-like element TnXax1 family transposase -
  B7L66_RS04480 (B7L66_04470) - 964088..965365 (+) 1278 WP_088016279.1 lytic murein transglycosylase -
  B7L66_RS04485 (B7L66_04475) avrXacE2 965450..966520 (+) 1071 WP_011052114.1 type III secretion system effector avirulence protein AvrXacE2 -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50177.62 Da        Isoelectric Point: 6.5718

>NTDB_id=226892 B7L66_RS04415 WP_005930970.1 948220..949614(-) (pilR) [Xanthomonas citri pv. citri strain TX160149]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMEILRATISKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAAPPGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=226892 B7L66_RS04415 WP_005930970.1 948220..949614(-) (pilR) [Xanthomonas citri pv. citri strain TX160149]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTACTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGTGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGA
CGCCTTGAATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCTACCGACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCG
GCCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCGCTGCCTTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGC
TGCGTTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U5FKR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment