Detailed information NTG0226674

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: CCUN_RS00325
• Genome accession: NZ_CP020867
• Coordinates: 59024..60439 (-)
• Length: 471 a.a.
• NCBI ID: WP_027304967.1
• Uniprot ID: -
• Organism: Campylobacter cuniculorum DSM 23162 = LMG 24588
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 54024..65439

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCUN_RS00305 (CCUN_0061)	ctsF	55033..56220 (-)	1188	WP_027304963.1	type II secretion system F family protein	Machinery gene
CCUN_RS00310 (CCUN_0062)	ctsE	56217..57827 (-)	1611	WP_035175584.1	GspE/PulE family protein	Machinery gene
CCUN_RS00315 (CCUN_0063)	-	57824..58414 (-)	591	WP_027304965.1	CDC27 family protein	-
CCUN_RS00320 (CCUN_0064)	ctsP	58417..59031 (-)	615	WP_027304966.1	ATP-binding protein	Machinery gene
CCUN_RS00325 (CCUN_0065)	ctsD	59024..60439 (-)	1416	WP_027304967.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CCUN_RS00330 (CCUN_0066)	-	60417..60752 (-)	336	WP_051521659.1	hypothetical protein	-
CCUN_RS00335 (CCUN_0067)	nifJ	60756..64316 (-)	3561	WP_027304969.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
CCUN_RS00340 (CCUN_0068)	-	64425..65066 (-)	642	WP_027304970.1	HAD family hydrolase	-

Sequence

Protein

• Length: 471 a.a.
• Molecular weight: 53100.64 Da
• Isoelectric Point: 5.5765

>NTDB_id=226674 CCUN_RS00325 WP_027304967.1 59024..60439(-) (ctsD) [Campylobacter cuniculorum DSM 23162 = LMG 24588]
MIKFILIKLCFFTIFLYGIEDCQKKLFNININENLSIEESLGELANYCSFSIVIKDEFAREKLLTNQNNIHIHQMNLDEI
FKLFITENDLGYEFDGKVLKISALQTKIFKISYITSVREGQSITKASVDAKPKQNEFSQNEDIEDNMIKSMEKFDFWQNI
ENEINALLISTKGYESKAIINPNAGIITIIGTNSQLQKVKNYLQKLEYRLKKQAIIDVSIIAVSLNKKHSSGINWQNFNL
GLNSTNSDGSGSFIQLQSGQGFVKNLGLRADLNFDSVLNFLSQSGKTKVLSNPKLMALNNQQAIISVGDTINYQIKESSK
GTENGSTVSESFNNYSIFIGILLNILPEISDDDKIMLRINPSLSDFKYPEDNVKQKEPRTIAPDTIQKKLSTVVQVENNQ
TLILGGLISHNQTQDDSSVNFLSKIPLLGLFFKGSNELSQATEIVFIITPSIIDNIKNTPSLKDLGFRYYE

Nucleotide

• Length: 1416 bp

>NTDB_id=226674 CCUN_RS00325 WP_027304967.1 59024..60439(-) (ctsD) [Campylobacter cuniculorum DSM 23162 = LMG 24588]
ATGATAAAATTTATATTGATTAAGCTTTGTTTTTTTACGATTTTTCTTTATGGCATAGAAGATTGTCAAAAAAAGCTTTT
TAATATTAATATCAACGAAAATTTAAGCATAGAAGAAAGCTTAGGAGAATTGGCGAATTATTGCTCTTTTAGCATAGTCA
TCAAGGACGAATTTGCTAGAGAAAAACTTTTAACAAATCAAAACAATATCCATATCCACCAAATGAATCTTGATGAAATT
TTTAAGCTTTTTATCACAGAAAATGACCTTGGCTATGAATTTGATGGCAAGGTTCTTAAAATTTCAGCCCTTCAAACAAA
GATTTTTAAAATCAGCTATATCACTTCAGTACGTGAAGGACAAAGCATCACAAAGGCTTCAGTCGATGCAAAACCTAAGC
AAAATGAATTCAGTCAAAACGAAGATATAGAGGATAATATGATTAAGAGTATGGAAAAATTCGATTTTTGGCAAAATATA
GAAAATGAAATCAATGCTCTTTTAATCTCCACAAAGGGTTATGAAAGTAAAGCCATCATCAATCCAAATGCAGGTATCAT
CACAATAATAGGCACAAATTCTCAACTTCAAAAAGTTAAAAACTATCTCCAAAAACTTGAATACAGACTTAAAAAACAAG
CCATTATCGATGTGAGTATTATCGCGGTATCTTTAAATAAAAAGCATTCTAGTGGGATTAATTGGCAAAATTTTAACTTA
GGTTTAAATTCTACAAATTCAGACGGAAGTGGTTCTTTCATTCAACTTCAAAGCGGACAAGGTTTTGTAAAAAATCTAGG
CTTAAGGGCGGATTTAAATTTTGATTCTGTTCTTAATTTTCTTTCACAAAGTGGAAAAACTAAGGTTTTATCTAATCCTA
AGCTTATGGCACTGAATAACCAACAAGCCATTATTTCTGTTGGAGATACAATCAACTATCAAATCAAAGAAAGTTCTAAA
GGCACTGAAAACGGCTCAACAGTGAGCGAAAGTTTTAATAATTATTCTATTTTCATAGGAATTTTACTCAATATCCTGCC
TGAAATTTCGGATGATGATAAAATTATGCTAAGAATTAATCCTAGTTTGAGTGATTTTAAATATCCCGAAGACAATGTCA
AACAAAAAGAGCCTCGCACTATAGCACCAGATACCATACAAAAAAAGCTTTCCACCGTCGTGCAGGTTGAAAACAACCAA
ACTCTAATCTTAGGAGGTCTCATCTCTCATAACCAAACTCAAGACGATTCTTCTGTGAATTTCTTGTCTAAAATTCCGCT
TCTTGGCTTATTTTTCAAAGGCTCAAATGAATTATCTCAAGCAACTGAAATTGTTTTTATCATCACTCCAAGCATTATTG
ATAATATCAAAAATACTCCCTCTCTTAAGGATTTAGGATTTAGATATTATGAGTGA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	74.895	100	0.754