Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   CCUN_RS00320 Genome accession   NZ_CP020867
Coordinates   58417..59031 (-) Length   204 a.a.
NCBI ID   WP_027304966.1    Uniprot ID   A0A1W6BUG6
Organism   Campylobacter cuniculorum DSM 23162 = LMG 24588     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 53417..64031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCUN_RS00305 (CCUN_0061) ctsF 55033..56220 (-) 1188 WP_027304963.1 type II secretion system F family protein Machinery gene
  CCUN_RS00310 (CCUN_0062) ctsE 56217..57827 (-) 1611 WP_035175584.1 GspE/PulE family protein Machinery gene
  CCUN_RS00315 (CCUN_0063) - 57824..58414 (-) 591 WP_027304965.1 CDC27 family protein -
  CCUN_RS00320 (CCUN_0064) ctsP 58417..59031 (-) 615 WP_027304966.1 ATP-binding protein Machinery gene
  CCUN_RS00325 (CCUN_0065) ctsD 59024..60439 (-) 1416 WP_027304967.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CCUN_RS00330 (CCUN_0066) - 60417..60752 (-) 336 WP_051521659.1 hypothetical protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23980.06 Da        Isoelectric Point: 10.2177

>NTDB_id=226673 CCUN_RS00320 WP_027304966.1 58417..59031(-) (ctsP) [Campylobacter cuniculorum DSM 23162 = LMG 24588]
MSEFVSIQSQERVLSRIKELLKQKSFILLLGQSGSGKTALLRQLCKEFKALHKTQIFKNQKEFQNFIEPVLQSESKPIVL
LDEVGMYDERTLESIRIYSDDLSFVLSSHKKPKIFNKEHFKSRFQAEFKLKNLDFGELKDYIKIKHGLDFFPKELKLIYK
IYQGNLRNIDKMLKSFKELHSFYKGQKSVKYILNLSAFENALLG

Nucleotide


Download         Length: 615 bp        

>NTDB_id=226673 CCUN_RS00320 WP_027304966.1 58417..59031(-) (ctsP) [Campylobacter cuniculorum DSM 23162 = LMG 24588]
ATGAGTGAATTTGTAAGCATACAAAGTCAAGAAAGGGTTTTATCAAGGATTAAAGAGCTTTTAAAGCAAAAGAGTTTCAT
TTTGCTTTTAGGTCAAAGTGGAAGTGGTAAAACCGCACTTCTTAGACAGCTTTGCAAGGAATTTAAAGCCTTGCATAAGA
CTCAAATTTTTAAAAATCAAAAAGAATTTCAAAATTTTATAGAGCCCGTTTTACAAAGTGAAAGCAAACCTATTGTTTTA
CTCGATGAAGTGGGAATGTATGATGAAAGAACTCTTGAAAGCATAAGAATTTATAGTGATGACTTAAGTTTTGTTTTAAG
TTCTCATAAAAAACCTAAAATCTTTAACAAGGAGCATTTTAAAAGCCGCTTTCAAGCAGAATTTAAACTTAAGAATTTGG
ACTTTGGGGAGCTTAAGGATTATATAAAAATTAAACATGGGCTTGATTTTTTTCCAAAAGAATTGAAATTAATTTATAAA
ATTTATCAAGGAAATCTAAGAAATATCGACAAAATGCTTAAGAGTTTTAAAGAGCTTCACAGCTTTTACAAGGGGCAAAA
AAGTGTAAAATATATTTTAAATTTAAGTGCTTTTGAAAATGCTTTGTTAGGATAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(27-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6BUG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

53.333

95.588

0.51

Multiple sequence alignment