Detailed information NTG0226671

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: CCUN_RS00305
• Genome accession: NZ_CP020867
• Coordinates: 55033..56220 (-)
• Length: 395 a.a.
• NCBI ID: WP_027304963.1
• Uniprot ID: A0A1W6BUF9
• Organism: Campylobacter cuniculorum DSM 23162 = LMG 24588
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 50033..61220

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCUN_RS00285 (CCUN_0057)	-	50037..50234 (-)	198	WP_027304959.1	hypothetical protein	-
CCUN_RS00290 (CCUN_0058)	-	50687..51247 (-)	561	WP_027304960.1	Fe-S-containing hydro-lyase	-
CCUN_RS00295 (CCUN_0059)	-	51332..52177 (-)	846	WP_027304961.1	fumarate hydratase	-
CCUN_RS00300 (CCUN_0060)	-	52482..54485 (-)	2004	WP_085296593.1	methyl-accepting chemotaxis protein	-
CCUN_RS00305 (CCUN_0061)	ctsF	55033..56220 (-)	1188	WP_027304963.1	type II secretion system F family protein	Machinery gene
CCUN_RS00310 (CCUN_0062)	ctsE	56217..57827 (-)	1611	WP_035175584.1	GspE/PulE family protein	Machinery gene
CCUN_RS00315 (CCUN_0063)	-	57824..58414 (-)	591	WP_027304965.1	CDC27 family protein	-
CCUN_RS00320 (CCUN_0064)	ctsP	58417..59031 (-)	615	WP_027304966.1	ATP-binding protein	Machinery gene
CCUN_RS00325 (CCUN_0065)	ctsD	59024..60439 (-)	1416	WP_027304967.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CCUN_RS00330 (CCUN_0066)	-	60417..60752 (-)	336	WP_051521659.1	hypothetical protein	-

Sequence

Protein

• Length: 395 a.a.
• Molecular weight: 45207.04 Da
• Isoelectric Point: 10.0192

>NTDB_id=226671 CCUN_RS00305 WP_027304963.1 55033..56220(-) (ctsF) [Campylobacter cuniculorum DSM 23162 = LMG 24588]
MKIYELEFIQKGLKAKKLIKASNLNVAQNLALKENLQILSLKEVKKPFFKTKISGQNFILFFKELSLLSGVGLSIKEALK
ELSKNHKNFDKIIAQINENLNLGQNLSKAFETPYLALNSGELALIKMAENTGKLSKIFMQIAELREKSLQNQKRVKKAIR
YPLIVFLSVCGAFLFLMFFVVGEFENLFENLGVDLPLMTRILLGIYEFLNKYYLFLAVFFLCVLLNLFFLYKKSNHFASI
CDFLVFKTPLLSHFMLCNQNYYFFIIFSLLLKSGIPTSKAFKIAYSSIKNRALFSKFKDIENSLSQGIDLSVAFEKVKIF
DSVVISMLNVAMKSAKLELLSNEIANFYERKQEDFMDKFLALLEPLMTLVVGILVLFLALGIFLPLWELGSGVKF

Nucleotide

• Length: 1188 bp

>NTDB_id=226671 CCUN_RS00305 WP_027304963.1 55033..56220(-) (ctsF) [Campylobacter cuniculorum DSM 23162 = LMG 24588]
TTGAAAATTTATGAACTTGAATTCATACAAAAAGGACTTAAAGCCAAAAAGCTTATTAAGGCTTCGAATTTAAATGTCGC
ACAAAATTTAGCCCTAAAAGAAAATCTTCAAATTTTAAGCCTTAAAGAAGTCAAAAAACCTTTTTTTAAAACTAAAATTT
CAGGTCAAAATTTTATTTTATTTTTTAAAGAGCTTAGTCTGCTTAGCGGAGTGGGTTTGAGTATCAAAGAAGCCTTAAAA
GAATTGTCAAAAAATCACAAAAATTTTGATAAAATCATAGCTCAAATCAATGAAAATTTAAATCTCGGACAAAATTTAAG
CAAAGCCTTTGAAACTCCCTATCTCGCTCTCAATTCAGGCGAACTTGCCCTCATTAAAATGGCCGAAAATACAGGAAAAC
TTAGCAAAATTTTTATGCAAATTGCTGAGCTTAGAGAAAAAAGTCTGCAAAATCAAAAACGAGTCAAAAAGGCTATAAGA
TACCCTTTGATAGTGTTTTTAAGCGTTTGTGGAGCATTTTTATTTTTAATGTTTTTTGTTGTTGGTGAATTTGAAAATTT
ATTTGAAAATTTGGGGGTTGATTTGCCTTTGATGACGCGAATTTTACTAGGAATTTATGAATTTTTAAACAAATACTATC
TTTTTTTAGCAGTATTTTTTCTCTGTGTTTTGCTCAATTTGTTTTTTCTTTATAAAAAATCAAATCATTTTGCTTCTATC
TGCGATTTTTTGGTGTTTAAAACGCCTTTATTGTCTCATTTTATGCTTTGCAATCAAAATTATTATTTCTTTATCATTTT
TTCTTTGCTTTTAAAAAGCGGAATTCCAACTTCTAAGGCTTTCAAAATTGCATACAGCAGTATTAAAAACAGGGCTTTGT
TTTCAAAATTTAAAGATATTGAAAATTCTTTGTCGCAAGGAATTGATTTGAGTGTGGCTTTCGAAAAGGTAAAAATTTTT
GATTCTGTGGTGATTTCTATGCTCAATGTTGCAATGAAAAGTGCAAAATTAGAGCTTTTAAGCAATGAAATTGCAAATTT
TTATGAGAGAAAACAAGAGGATTTTATGGATAAATTTTTAGCCCTGCTTGAACCTTTAATGACCTTAGTGGTTGGAATTT
TGGTTTTATTTTTGGCTTTGGGAATTTTTTTGCCTTTGTGGGAGCTTGGTTCTGGTGTGAAATTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (266-385)

• Type II secretion system (T2SS), protein F (T2SSF) (61-181)

3D structure

• AlphaFold DB: A0A1W6BUF9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	54.177	100	0.542