Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   CCUN_RS00310 Genome accession   NZ_CP020867
Coordinates   56217..57827 (-) Length   536 a.a.
NCBI ID   WP_035175584.1    Uniprot ID   A0A1W6BUG2
Organism   Campylobacter cuniculorum DSM 23162 = LMG 24588     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51217..62827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCUN_RS00295 (CCUN_0059) - 51332..52177 (-) 846 WP_027304961.1 fumarate hydratase -
  CCUN_RS00300 (CCUN_0060) - 52482..54485 (-) 2004 WP_085296593.1 methyl-accepting chemotaxis protein -
  CCUN_RS00305 (CCUN_0061) ctsF 55033..56220 (-) 1188 WP_027304963.1 type II secretion system F family protein Machinery gene
  CCUN_RS00310 (CCUN_0062) ctsE 56217..57827 (-) 1611 WP_035175584.1 GspE/PulE family protein Machinery gene
  CCUN_RS00315 (CCUN_0063) - 57824..58414 (-) 591 WP_027304965.1 CDC27 family protein -
  CCUN_RS00320 (CCUN_0064) ctsP 58417..59031 (-) 615 WP_027304966.1 ATP-binding protein Machinery gene
  CCUN_RS00325 (CCUN_0065) ctsD 59024..60439 (-) 1416 WP_027304967.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CCUN_RS00330 (CCUN_0066) - 60417..60752 (-) 336 WP_051521659.1 hypothetical protein -

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 62170.17 Da        Isoelectric Point: 7.8190

>NTDB_id=226672 CCUN_RS00310 WP_035175584.1 56217..57827(-) (ctsE) [Campylobacter cuniculorum DSM 23162 = LMG 24588]
MREFLSKLGFSGGNFDFKDVKCQEFLFDLYLKDKLSLDELYLKLGLESEEFLKTLAKYYKMEFLSFENYDENFKLPLNLL
LEFKILPIKTDEENVYIARAKPFSLELLERIQSLFRDKFVKAVISDCFKISKALNRLRIKEELKNLSFQLKEEWEDNFKQ
ENQSSVSKIFDFILKEALNLNSSDIHIESRKNDALIRFRVDGELQFFCILEKEIYQALVFHIKFLTHLNVAEQRKAQDGN
FELKLENQNYDFRVSTLPLIYGESVVLRILKHDEKFLELKNLNFLDSHLKALQKAISSSYGMILITGATGSGKSTTLYAC
LNALKSIKKKIITAEDPIEYKMQGIQQILLNPKAGLEFNNALRAILRQDPDIIMIGEIRDEQSLDIAIKSSLTGHLLLST
LHTNDSISTIDRLLDMKAKPYLIAQALSLIVAQRLVRKLCIFCKRKSEKKYTLFQGQFYESRGCEHCNYSGYSGRDLVAE
FLVIDENLKELIRENVGKKRILEYARKQGFQTMLECGLQKAKEGLTSIEELQRVLD

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=226672 CCUN_RS00310 WP_035175584.1 56217..57827(-) (ctsE) [Campylobacter cuniculorum DSM 23162 = LMG 24588]
ATGAGAGAATTTTTATCCAAACTTGGTTTTAGTGGTGGAAATTTTGATTTTAAGGATGTAAAATGTCAAGAGTTTTTATT
TGATTTGTATCTTAAAGACAAGCTTAGTTTAGATGAGCTTTATTTAAAATTAGGTTTAGAGAGTGAGGAATTTTTAAAAA
CCTTAGCAAAATACTATAAAATGGAATTTCTAAGTTTTGAAAATTATGATGAAAATTTCAAATTACCTTTAAATTTGCTC
TTGGAATTTAAAATTCTGCCGATAAAAACCGATGAAGAAAATGTCTATATTGCAAGAGCTAAACCTTTTTCTTTAGAGCT
TTTAGAGAGAATACAAAGCCTTTTTAGAGATAAATTTGTCAAAGCTGTTATAAGTGATTGTTTTAAAATTTCTAAAGCAT
TAAATCGTCTGCGCATCAAAGAGGAGCTTAAAAATTTAAGCTTTCAACTTAAGGAGGAATGGGAGGATAATTTCAAACAA
GAAAATCAAAGTTCAGTCAGCAAAATTTTTGATTTTATCCTTAAAGAAGCTTTGAATTTAAATTCAAGTGATATTCACAT
AGAATCAAGAAAAAATGACGCTTTGATAAGATTTAGAGTCGATGGAGAACTTCAATTTTTTTGTATTTTAGAAAAAGAAA
TTTATCAAGCCTTAGTTTTTCACATCAAATTTTTAACCCATTTAAATGTAGCCGAGCAACGCAAGGCTCAAGATGGAAAT
TTTGAGCTAAAACTAGAAAATCAAAATTATGATTTTAGAGTTTCCACCCTGCCTTTAATCTACGGGGAAAGCGTTGTTTT
AAGGATACTTAAACATGATGAGAAATTTTTAGAGCTTAAGAATTTAAATTTCTTAGATTCTCATTTAAAAGCACTTCAAA
AGGCTATTTCTTCCTCTTATGGTATGATTTTAATCACAGGGGCAACAGGAAGTGGCAAAAGTACCACCTTGTATGCGTGT
TTAAATGCCTTAAAATCGATAAAGAAAAAGATTATCACAGCGGAGGATCCTATAGAATACAAAATGCAAGGGATACAACA
AATTTTACTCAATCCTAAAGCGGGATTAGAATTTAACAATGCTTTAAGAGCCATTTTAAGACAGGATCCGGATATTATAA
TGATTGGTGAAATTCGCGATGAGCAAAGCCTTGATATAGCCATCAAATCCTCTCTTACAGGACATTTGCTTTTAAGCACT
TTGCATACAAATGATAGCATCAGCACAATAGACAGACTTTTGGATATGAAAGCAAAACCTTATCTTATCGCACAGGCTTT
GAGTTTAATTGTGGCTCAAAGACTTGTAAGAAAACTCTGCATTTTTTGCAAAAGAAAAAGTGAGAAAAAATACACTTTAT
TTCAGGGACAATTCTATGAAAGTAGGGGCTGTGAGCATTGCAATTATAGCGGTTATTCGGGTAGGGATTTGGTGGCAGAA
TTTTTAGTGATTGATGAGAATTTAAAAGAGCTTATCCGTGAAAATGTAGGCAAAAAAAGGATTTTAGAATACGCTAGAAA
ACAAGGCTTTCAAACTATGTTAGAATGCGGTTTGCAAAAGGCTAAGGAAGGATTAACAAGCATTGAAGAGCTTCAAAGGG
TGTTGGATTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(45-142)

Type II/IV secretion system protein (T2SSE)

(173-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6BUG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

60.039

95.709

0.575

Multiple sequence alignment