Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PD_RS03255 Genome accession   NC_004556
Coordinates   773381..773875 (+) Length   164 a.a.
NCBI ID   WP_004089231.1    Uniprot ID   Q87DQ5
Organism   Xylella fastidiosa Temecula1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 768381..778875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PD_RS03240 (PD0623) cyoB 768710..770707 (-) 1998 WP_004083794.1 cytochrome o ubiquinol oxidase subunit I -
  PD_RS03245 (PD0624) cyoA 770701..771660 (-) 960 WP_011097726.1 ubiquinol oxidase subunit II -
  PD_RS03250 (PD0625) - 772129..773130 (-) 1002 WP_004083792.1 polyprenyl synthetase family protein -
  PD_RS03255 (PD0626) ssb 773381..773875 (+) 495 WP_004089231.1 single-stranded DNA-binding protein Machinery gene
  PD_RS12645 - 774151..774315 (+) 165 WP_014607674.1 hypothetical protein -
  PD_RS03260 (PD0627) - 775524..776435 (+) 912 WP_004089229.1 class I SAM-dependent methyltransferase -
  PD_RS03265 (PD0628) - 776748..777944 (+) 1197 WP_024749296.1 cation:proton antiporter -
  PD_RS03270 (PD0629) gloA 778105..778632 (-) 528 WP_004089226.1 lactoylglutathione lyase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18227.20 Da        Isoelectric Point: 5.9527

>NTDB_id=22651 PD_RS03255 WP_004089231.1 773381..773875(+) (ssb) [Xylella fastidiosa Temecula1]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKDGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQTRQPSQSPQSSPPPMDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=22651 PD_RS03255 WP_004089231.1 773381..773875(+) (ssb) [Xylella fastidiosa Temecula1]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAATCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGATGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGCCAGGATGGCCAAGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGTGATGGTGGCGGTATGGGCGGGGGCGGTGAGCGCCCACAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGACCCGTCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87DQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.53
  ssb Glaesserella parasuis strain SC1401

46.927

100

0.512
  ssb Neisseria meningitidis MC58

41.618

100

0.439
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.433

Multiple sequence alignment