Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BBP_RS02450 Genome accession   NC_004545
Coordinates   549120..549620 (-) Length   166 a.a.
NCBI ID   WP_011091594.1    Uniprot ID   -
Organism   Buchnera aphidicola str. Bp (Baizongia pistaciae)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 544120..554620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP_RS02435 (bbp485) - 544861..546459 (-) 1599 WP_011091591.1 peptide chain release factor 3 -
  BBP_RS02440 (bbp486) - 547566..548141 (-) 576 WP_011091592.1 NfuA family Fe-S biogenesis protein -
  BBP_RS02445 (bbp487) bioH 548270..549067 (+) 798 WP_011091593.1 pimeloyl-ACP methyl ester esterase BioH -
  BBP_RS02450 (bbp488) ssb 549120..549620 (-) 501 WP_011091594.1 single-stranded DNA-binding protein Machinery gene
  BBP_RS02460 (bbp489) dnaB 550616..552019 (+) 1404 WP_050703102.1 replicative DNA helicase -
  BBP_RS02465 (bbp490) gshB 552392..553366 (+) 975 WP_011091596.1 glutathione synthase -
  BBP_RS02470 (bbp491) - 553470..554033 (+) 564 WP_044010663.1 YqgE/AlgH family protein -
  BBP_RS02475 (bbp492) ruvX 554045..554458 (+) 414 WP_011091598.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18716.96 Da        Isoelectric Point: 5.9615

>NTDB_id=22612 BBP_RS02450 WP_011091594.1 549120..549620(-) (ssb) [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
MASRGINKVILIGYLGQDPDVRYMQNGSAVTNITLATSETWKDKNNGEIKEKTEWHRIVFFNKLAEIAGEYLKKGSQVYI
EGSLQTRKWKDQNGIERYITEIIVSVGGTMQMLGSRNSSSLTASSGLSKNNDNLSKQLLSEKKQESFNDSKLQNNNLDFD
DEDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=22612 BBP_RS02450 WP_011091594.1 549120..549620(-) (ssb) [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
ATGGCTAGCAGAGGTATTAACAAAGTTATTTTGATTGGATATTTAGGACAAGATCCGGATGTTCGATATATGCAAAATGG
TAGTGCAGTAACCAACATTACATTGGCTACGTCTGAAACTTGGAAAGATAAAAATAATGGTGAAATAAAAGAAAAAACGG
AATGGCATCGTATTGTTTTTTTTAATAAGTTAGCTGAAATTGCAGGAGAATATTTAAAAAAAGGATCACAGGTTTATATT
GAAGGTTCATTGCAGACTAGAAAATGGAAAGATCAGAATGGGATAGAACGTTATATTACTGAAATTATAGTTAGTGTGGG
TGGAACTATGCAAATGTTAGGAAGTCGCAATTCTAGTTCATTAACTGCGTCGTCTGGCTTATCTAAGAATAATGATAATC
TATCAAAACAATTGTTGTCAGAAAAAAAACAAGAATCGTTTAATGATAGCAAACTCCAAAATAATAATTTAGATTTTGAT
GATGAAGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.371

100

0.572
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Glaesserella parasuis strain SC1401

50.649

92.771

0.47
  ssb Neisseria gonorrhoeae MS11

42.938

100

0.458

Multiple sequence alignment