Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   B7941_RS14555 Genome accession   NZ_CP020805
Coordinates   2971371..2971808 (-) Length   145 a.a.
NCBI ID   WP_043020787.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9D-6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2966371..2976808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7941_RS14505 (B7941_14490) sinI 2966755..2966928 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  B7941_RS14510 (B7941_14495) sinR 2966962..2967297 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  B7941_RS14515 (B7941_14500) tasA 2967345..2968130 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  B7941_RS14520 (B7941_14505) sipW 2968210..2968779 (-) 570 WP_085342188.1 signal peptidase I SipW -
  B7941_RS14525 (B7941_14510) tapA 2968751..2969422 (-) 672 WP_085342189.1 amyloid fiber anchoring/assembly protein TapA -
  B7941_RS14530 (B7941_14515) - 2969681..2970010 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  B7941_RS14535 (B7941_14520) - 2970050..2970229 (-) 180 WP_003153093.1 YqzE family protein -
  B7941_RS14540 (B7941_14525) comGG 2970286..2970663 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  B7941_RS14545 (B7941_14530) comGF 2970664..2971164 (-) 501 WP_257474763.1 competence type IV pilus minor pilin ComGF -
  B7941_RS14550 (B7941_14535) comGE 2971073..2971387 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  B7941_RS14555 (B7941_14540) comGD 2971371..2971808 (-) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  B7941_RS14560 (B7941_14545) comGC 2971798..2972106 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  B7941_RS14565 (B7941_14550) comGB 2972111..2973148 (-) 1038 WP_085342190.1 competence type IV pilus assembly protein ComGB Machinery gene
  B7941_RS14570 (B7941_14555) comGA 2973135..2974205 (-) 1071 WP_085342191.1 competence type IV pilus ATPase ComGA Machinery gene
  B7941_RS14575 (B7941_14560) - 2974402..2975352 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  B7941_RS14580 (B7941_14565) - 2975498..2976799 (+) 1302 WP_012117986.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16271.77 Da        Isoelectric Point: 10.2475

>NTDB_id=225960 B7941_RS14555 WP_043020787.1 2971371..2971808(-) (comGD) [Bacillus velezensis strain 9D-6]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPAYTHLAVRQKTELLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=225960 B7941_RS14555 WP_043020787.1 2971371..2971808(-) (comGD) [Bacillus velezensis strain 9D-6]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTACACCCACCTTGCCGTGCGGCAAAAAACAGAACTGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGACTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.164

100

0.566

Multiple sequence alignment