Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SPYM18_RS07015 Genome accession   NC_003485
Coordinates   1350735..1351400 (-) Length   221 a.a.
NCBI ID   WP_002983685.1    Uniprot ID   -
Organism   Streptococcus pyogenes MGAS8232     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1345735..1356400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM18_RS07010 (spyM18_1623) hpf 1350107..1350655 (-) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SPYM18_RS07015 (spyM18_1624) comFC/cflB 1350735..1351400 (-) 666 WP_002983685.1 ComF family protein Machinery gene
  SPYM18_RS07020 (spyM18_1625) comFA/cflA 1351372..1352697 (-) 1326 WP_011018051.1 DEAD/DEAH box helicase Machinery gene
  SPYM18_RS07025 (spyM18_1626) - 1352753..1353385 (+) 633 WP_009880468.1 YigZ family protein -
  SPYM18_RS07030 (spyM18_1627) cysK 1353513..1354454 (+) 942 WP_011018052.1 cysteine synthase A -
  SPYM18_RS07035 (spyM18_1628) - 1354472..1354849 (-) 378 WP_002991882.1 S1 RNA-binding domain-containing protein -
  SPYM18_RS07040 (spyM18_1629) - 1354849..1356249 (-) 1401 WP_023079685.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25163.41 Da        Isoelectric Point: 9.4626

>NTDB_id=22593 SPYM18_RS07015 WP_002983685.1 1350735..1351400(-) (comFC/cflB) [Streptococcus pyogenes MGAS8232]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=22593 SPYM18_RS07015 WP_002983685.1 1350735..1351400(-) (comFC/cflB) [Streptococcus pyogenes MGAS8232]
ATGATCTGTTTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGGAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATTCCAGTCCCGGTTCCTGTAAGTCCGGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412