Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SPYM18_RS06080 Genome accession   NC_003485
Coordinates   1176039..1177001 (-) Length   320 a.a.
NCBI ID   WP_011017941.1    Uniprot ID   -
Organism   Streptococcus pyogenes MGAS8232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1171039..1182001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM18_RS06065 (spyM18_1401) - 1171876..1172583 (-) 708 WP_011017939.1 O-methyltransferase -
  SPYM18_RS06070 (spyM18_1402) - 1172649..1173845 (-) 1197 WP_002995765.1 L-lactate MFS transporter -
  SPYM18_RS06075 (spyM18_1403) pepF 1174221..1176026 (-) 1806 WP_011017940.1 oligoendopeptidase F Regulator
  SPYM18_RS06080 (spyM18_1405) coiA 1176039..1177001 (-) 963 WP_011017941.1 competence protein CoiA Machinery gene
  SPYM18_RS06085 (spyM18_1406) - 1177296..1178012 (-) 717 WP_041174236.1 pseudouridine synthase -
  SPYM18_RS06090 (spyM18_1407) nagB 1178131..1178835 (-) 705 WP_011017943.1 glucosamine-6-phosphate deaminase -
  SPYM18_RS06095 (spyM18_1408) queA 1179037..1180065 (+) 1029 WP_002983989.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SPYM18_RS06100 (spyM18_1409) - 1180072..1181292 (+) 1221 WP_011017944.1 DUF3114 domain-containing protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37762.15 Da        Isoelectric Point: 10.2597

>NTDB_id=22585 SPYM18_RS06080 WP_011017941.1 1176039..1177001(-) (coiA) [Streptococcus pyogenes MGAS8232]
MTKILTALDGKNQLISLVTQPISTKPPFRCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVGWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFYQIKGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=22585 SPYM18_RS06080 WP_011017941.1 1176039..1177001(-) (coiA) [Streptococcus pyogenes MGAS8232]
GTGACAAAAATATTAACTGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTCGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTTTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TAGGATGGTTGCTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCATAATATTATGGAAATGTTTCGGTTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTATCAAATTAAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTACAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

42.581

96.875

0.413
  coiA Streptococcus pneumoniae Rx1

41.613

96.875

0.403
  coiA Streptococcus pneumoniae D39

41.613

96.875

0.403
  coiA Streptococcus pneumoniae R6

41.613

96.875

0.403
  coiA Streptococcus pneumoniae TIGR4

41.613

96.875

0.403
  coiA Lactococcus lactis subsp. cremoris KW2

39.329

100

0.403

Multiple sequence alignment