Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B5M07_RS10190 Genome accession   NZ_CP020694
Coordinates   2107260..2107802 (+) Length   180 a.a.
NCBI ID   WP_120351221.1    Uniprot ID   A0A386TGJ3
Organism   Sulfitobacter sp. D7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2102260..2112802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5M07_RS10175 (B5M07_10190) - 2103540..2105630 (+) 2091 WP_120351219.1 ABC transporter ATP-binding protein -
  B5M07_RS10180 (B5M07_10195) - 2105726..2106253 (-) 528 WP_120351220.1 hypothetical protein -
  B5M07_RS10185 (B5M07_10200) - 2106433..2106978 (-) 546 WP_120352218.1 lytic transglycosylase domain-containing protein -
  B5M07_RS10190 (B5M07_10205) ssb 2107260..2107802 (+) 543 WP_120351221.1 single-stranded DNA-binding protein Machinery gene
  B5M07_RS10195 (B5M07_10210) aroB 2108097..2109212 (-) 1116 WP_120351222.1 3-dehydroquinate synthase -
  B5M07_RS10200 (B5M07_10215) - 2109205..2109801 (-) 597 WP_120351223.1 shikimate kinase -
  B5M07_RS19445 - 2109882..2110031 (+) 150 WP_007120408.1 hypothetical protein -
  B5M07_RS10205 (B5M07_10220) - 2110037..2111689 (+) 1653 WP_368073830.1 hypothetical protein -
  B5M07_RS10210 (B5M07_10225) - 2111686..2112669 (+) 984 WP_120351225.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18174.71 Da        Isoelectric Point: 5.2704

>NTDB_id=225359 B5M07_RS10190 WP_120351221.1 2107260..2107802(+) (ssb) [Sulfitobacter sp. D7]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRIAEQYLKKGSKVYI
EGQLQTRKWQDQSGADRYSTEVVLQGFGGTLTMLDGPGGAGSGGGGGGGGYGGGGGGGYGGGGNDYGGGYDSGPSSSGGG
SGGGGGGGGGSRDLDDEIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=225359 B5M07_RS10190 WP_120351221.1 2107260..2107802(+) (ssb) [Sulfitobacter sp. D7]
ATGGCCGGCTCAGTGAACAAAGTGATCCTTATCGGCAACCTCGGGCGCGACCCCGAGGTGCGGTCGTTCCAGAACGGCGG
CAAAGTGTGCAACCTGCGCATCGCCACCTCGGAAACATGGAAAGACCGCAACACCGGTGAGCGCCGCGAGAAGACCGAAT
GGCATTCGGTGGCGATCTTCCAAGAGGGGCTCGTTCGCATCGCCGAGCAGTACCTCAAGAAGGGCTCCAAAGTGTATATC
GAAGGCCAGTTGCAAACCCGCAAATGGCAAGACCAATCCGGCGCGGACCGCTATAGCACCGAAGTGGTGCTGCAGGGCTT
TGGCGGCACGCTGACCATGCTCGACGGTCCCGGTGGCGCCGGGTCCGGCGGCGGTGGTGGTGGCGGCGGCTACGGTGGTG
GCGGCGGTGGCGGCTACGGTGGTGGCGGCAATGACTACGGCGGCGGCTATGACAGCGGCCCGTCCTCCTCGGGCGGCGGC
AGCGGTGGTGGCGGCGGCGGCGGTGGCGGCAGCCGTGATCTCGATGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A386TGJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.136

97.778

0.5
  ssb Glaesserella parasuis strain SC1401

44.444

100

0.467
  ssb Neisseria gonorrhoeae MS11

41.436

100

0.417
  ssb Neisseria meningitidis MC58

41.436

100

0.417

Multiple sequence alignment