Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   VV1_RS06545 Genome accession   NC_004459
Coordinates   1363436..1364026 (+) Length   196 a.a.
NCBI ID   WP_011079353.1    Uniprot ID   -
Organism   Vibrio vulnificus CMCP6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1358436..1369026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS06530 (VV1_1375) oxyR 1358816..1359715 (+) 900 WP_011079350.1 DNA-binding transcriptional regulator OxyR -
  VV1_RS06535 (VV1_1376) - 1359786..1362299 (-) 2514 WP_011079351.1 PBP1A family penicillin-binding protein -
  VV1_RS06540 (VV1_1377) pilM 1362439..1363446 (+) 1008 WP_011079352.1 type IV pilus assembly protein PilM Machinery gene
  VV1_RS06545 (VV1_1378) pilN 1363436..1364026 (+) 591 WP_011079353.1 PilN domain-containing protein Machinery gene
  VV1_RS06550 (VV1_1379) pilO 1364019..1364609 (+) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  VV1_RS06555 (VV1_1380) pilP 1364599..1365111 (+) 513 WP_011079355.1 pilus assembly protein PilP Machinery gene
  VV1_RS06560 (VV1_1381) pilQ 1365125..1366909 (+) 1785 WP_011079356.1 type IV pilus secretin PilQ family protein Machinery gene
  VV1_RS06565 (VV1_1382) aroK 1367111..1367629 (+) 519 WP_011079357.1 shikimate kinase AroK -
  VV1_RS06570 (VV1_1383) aroB 1367662..1368753 (+) 1092 WP_011079358.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22672.91 Da        Isoelectric Point: 7.6441

>NTDB_id=22528 VV1_RS06545 WP_011079353.1 1363436..1364026(+) (pilN) [Vibrio vulnificus CMCP6]
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSTFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=22528 VV1_RS06545 WP_011079353.1 1363436..1364026(+) (pilN) [Vibrio vulnificus CMCP6]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCCTGATCGCGGTCGGTATTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATCCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATCCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAACGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCTGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCTGGCATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCACCTTTCTAAAAGAAGTGGAAATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTCTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

67.956

92.347

0.628
  pilN Vibrio cholerae strain A1552

63.277

90.306

0.571

Multiple sequence alignment