Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   VV1_RS06555 Genome accession   NC_004459
Coordinates   1364599..1365111 (+) Length   170 a.a.
NCBI ID   WP_011079355.1    Uniprot ID   Q7MH81
Organism   Vibrio vulnificus CMCP6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1359599..1370111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS06535 (VV1_1376) - 1359786..1362299 (-) 2514 WP_011079351.1 PBP1A family penicillin-binding protein -
  VV1_RS06540 (VV1_1377) pilM 1362439..1363446 (+) 1008 WP_011079352.1 type IV pilus assembly protein PilM Machinery gene
  VV1_RS06545 (VV1_1378) pilN 1363436..1364026 (+) 591 WP_011079353.1 PilN domain-containing protein Machinery gene
  VV1_RS06550 (VV1_1379) pilO 1364019..1364609 (+) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  VV1_RS06555 (VV1_1380) pilP 1364599..1365111 (+) 513 WP_011079355.1 pilus assembly protein PilP Machinery gene
  VV1_RS06560 (VV1_1381) pilQ 1365125..1366909 (+) 1785 WP_011079356.1 type IV pilus secretin PilQ family protein Machinery gene
  VV1_RS06565 (VV1_1382) aroK 1367111..1367629 (+) 519 WP_011079357.1 shikimate kinase AroK -
  VV1_RS06570 (VV1_1383) aroB 1367662..1368753 (+) 1092 WP_011079358.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19034.13 Da        Isoelectric Point: 10.2810

>NTDB_id=22530 VV1_RS06555 WP_011079355.1 1364599..1365111(+) (pilP) [Vibrio vulnificus CMCP6]
MRSSLSLVAVLVLLSGCRANTEPMEGFIRQVESEARQEMAKLQPEREYIPIDYLARENRRPFELPKEAVIASQPVVKKDC
WQPPSRAKNGKLERYPLSQLRLKGVMGSGNTIAGLVQTPQGKVEKVHPGQFIGQNNGKVTVVTPSYILINETLPDGLGCW
QQRKVRLALR

Nucleotide


Download         Length: 513 bp        

>NTDB_id=22530 VV1_RS06555 WP_011079355.1 1364599..1365111(+) (pilP) [Vibrio vulnificus CMCP6]
ATGAGAAGTAGTTTATCGCTCGTCGCTGTGCTGGTCTTGCTATCGGGTTGTCGAGCGAATACCGAACCGATGGAAGGTTT
TATCCGCCAAGTTGAATCGGAAGCACGTCAAGAAATGGCCAAGTTACAGCCAGAGCGCGAGTACATCCCGATTGATTACT
TAGCTCGAGAAAATCGCCGTCCTTTTGAATTACCTAAGGAAGCCGTGATTGCCTCTCAACCTGTCGTTAAGAAAGACTGC
TGGCAGCCACCTTCACGGGCTAAAAATGGCAAGTTGGAGCGTTATCCACTTAGCCAATTGCGTCTGAAAGGGGTGATGGG
GAGTGGCAATACCATTGCCGGTCTCGTACAGACTCCACAAGGCAAAGTGGAGAAAGTTCACCCAGGGCAATTTATCGGCC
AGAACAATGGCAAAGTGACCGTAGTAACGCCGTCTTACATATTGATCAATGAAACCCTTCCTGATGGTTTAGGTTGCTGG
CAGCAACGTAAAGTCAGACTGGCATTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(24-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MH81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

64.072

98.235

0.629
  pilP Vibrio cholerae strain A1552

59.036

97.647

0.576

Multiple sequence alignment