Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   VV1_RS06540 Genome accession   NC_004459
Coordinates   1362439..1363446 (+) Length   335 a.a.
NCBI ID   WP_011079352.1    Uniprot ID   -
Organism   Vibrio vulnificus CMCP6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1357439..1368446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS06525 (VV1_3218) - 1358271..1358543 (-) 273 WP_011079349.1 DUF3624 domain-containing protein -
  VV1_RS06530 (VV1_1375) oxyR 1358816..1359715 (+) 900 WP_011079350.1 DNA-binding transcriptional regulator OxyR -
  VV1_RS06535 (VV1_1376) - 1359786..1362299 (-) 2514 WP_011079351.1 PBP1A family penicillin-binding protein -
  VV1_RS06540 (VV1_1377) pilM 1362439..1363446 (+) 1008 WP_011079352.1 type IV pilus assembly protein PilM Machinery gene
  VV1_RS06545 (VV1_1378) pilN 1363436..1364026 (+) 591 WP_011079353.1 PilN domain-containing protein Machinery gene
  VV1_RS06550 (VV1_1379) pilO 1364019..1364609 (+) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  VV1_RS06555 (VV1_1380) pilP 1364599..1365111 (+) 513 WP_011079355.1 pilus assembly protein PilP Machinery gene
  VV1_RS06560 (VV1_1381) pilQ 1365125..1366909 (+) 1785 WP_011079356.1 type IV pilus secretin PilQ family protein Machinery gene
  VV1_RS06565 (VV1_1382) aroK 1367111..1367629 (+) 519 WP_011079357.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37624.02 Da        Isoelectric Point: 6.3873

>NTDB_id=22527 VV1_RS06540 WP_011079352.1 1362439..1363446(+) (pilM) [Vibrio vulnificus CMCP6]
MGKPFVTGIDIGHRSLKAVILKPYGEHYALLGYKEIIIKDGIFSDNHTLNHQEIVNSLKELKKELPLFRYQVALAVPDSS
VISKMLSIDAELDGREREFAILQAFAHQSPFPVDELSIDYVQLVEETSKTNHSYQVYATKKEVVESRVRVAEEVGLKPVL
VDVHAHSLCNILTLAAERHPDKASYCLLDVGYDTSSLVMSRRNEPPLVKEFAYGVSHLNASIGDDLTSPDAHEKTDIFNK
ELTERVRRQLQLFQSMDSQSKVNGLWICGEGAITPLLSETLQRKLSLECEVLNPLALFEQKTAKRKRRIVDWHHFSVAAG
LAIGGIQWLEDSHAA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=22527 VV1_RS06540 WP_011079352.1 1362439..1363446(+) (pilM) [Vibrio vulnificus CMCP6]
ATGGGTAAGCCGTTCGTTACCGGAATTGATATTGGTCATCGTAGCCTCAAGGCTGTCATTCTGAAACCTTATGGAGAGCA
CTACGCCCTGTTAGGGTACAAAGAAATAATCATTAAAGACGGTATTTTCTCAGATAACCACACTCTGAATCATCAAGAAA
TTGTCAATAGCCTGAAAGAACTGAAGAAGGAACTGCCTCTTTTCCGTTATCAGGTGGCACTGGCGGTGCCTGATAGTTCA
GTGATTAGTAAGATGTTATCGATCGATGCGGAGTTGGATGGTCGAGAGCGAGAATTCGCTATCCTTCAGGCGTTTGCACA
TCAGTCGCCATTTCCTGTCGATGAATTATCGATTGATTATGTCCAATTGGTCGAAGAAACCAGCAAAACGAATCATAGCT
ATCAAGTTTACGCCACCAAAAAAGAGGTGGTGGAAAGCCGTGTGCGTGTCGCAGAAGAAGTGGGACTGAAACCCGTGCTG
GTAGATGTGCATGCGCATAGCCTGTGCAACATCTTAACGTTAGCGGCAGAGCGCCATCCAGATAAAGCTAGCTATTGCTT
GTTGGATGTGGGTTATGACACCTCCTCTTTGGTGATGTCGCGTCGCAACGAACCGCCTTTAGTTAAAGAATTTGCCTATG
GGGTGTCTCACCTCAATGCGTCGATAGGCGACGATCTGACTTCTCCTGATGCTCATGAGAAAACCGACATCTTTAATAAA
GAACTGACAGAGCGAGTTCGTCGGCAATTGCAGCTGTTCCAATCTATGGATAGCCAAAGCAAAGTGAATGGCCTCTGGAT
CTGCGGTGAAGGCGCGATTACTCCGTTGTTGAGTGAAACGTTGCAGAGAAAGCTGAGTTTGGAGTGCGAAGTCCTTAATC
CTCTGGCTCTGTTTGAGCAAAAAACGGCGAAAAGAAAGCGCCGTATTGTTGATTGGCACCATTTTTCGGTGGCAGCGGGA
TTAGCGATTGGTGGCATTCAGTGGCTGGAGGATAGCCATGCAGCATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

53.731

100

0.537
  pilM Vibrio cholerae strain A1552

49.56

100

0.504

Multiple sequence alignment