Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C_RS23900 Genome accession   NC_004431
Coordinates   4826685..4827221 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli CFT073     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4821685..4832221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C_RS23880 (c5045) aphA 4821973..4822686 (+) 714 WP_001226933.1 acid phosphatase AphA -
  C_RS23885 (c5046) yjbQ 4822797..4823213 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C_RS23890 (c5047) yjbR 4823217..4823573 (+) 357 WP_000155661.1 MmcQ/YjbR family DNA-binding protein -
  C_RS23895 (c5048) uvrA 4823608..4826430 (-) 2823 WP_000357764.1 excinuclease ABC subunit UvrA -
  C_RS23900 (c5049) ssb 4826685..4827221 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C_RS23905 (c5050) yjcB 4827320..4827601 (-) 282 WP_001304710.1 YjcB family protein -
  C_RS23910 (c5052) pdeC 4828030..4829583 (+) 1554 WP_001327775.1 c-di-GMP phosphodiesterase PdeC -
  C_RS23915 (c5053) soxS 4829619..4829942 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C_RS23920 (c5054) soxR 4830028..4830492 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=22511 C_RS23900 WP_000168305.1 4826685..4827221(+) (ssb) [Escherichia coli CFT073]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=22511 C_RS23900 WP_000168305.1 4826685..4827221(+) (ssb) [Escherichia coli CFT073]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment