Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   B7P03_RS06040 Genome accession   NZ_CP020618
Coordinates   1266535..1267053 (-) Length   172 a.a.
NCBI ID   WP_049418760.1    Uniprot ID   -
Organism   Staphylococcus hominis subsp. hominis strain K1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1261535..1272053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7P03_RS06015 (B7P03_06005) - 1263011..1263640 (+) 630 WP_002447997.1 NDxxF motif lipoprotein -
  B7P03_RS06020 (B7P03_06010) - 1263738..1264316 (-) 579 WP_049335854.1 histidine phosphatase family protein -
  B7P03_RS06025 (B7P03_06015) - 1264595..1264843 (-) 249 WP_002447983.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  B7P03_RS06030 (B7P03_06020) - 1265124..1266068 (-) 945 WP_087436706.1 hypothetical protein -
  B7P03_RS06035 (B7P03_06025) rpsR 1266251..1266493 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  B7P03_RS06040 (B7P03_06030) ssbA 1266535..1267053 (-) 519 WP_049418760.1 single-stranded DNA-binding protein Machinery gene
  B7P03_RS06045 (B7P03_06035) rpsF 1267075..1267371 (-) 297 WP_002447961.1 30S ribosomal protein S6 -
  B7P03_RS06050 (B7P03_06040) - 1267620..1267811 (+) 192 WP_002447995.1 hypothetical protein -
  B7P03_RS06055 (B7P03_06045) ychF 1267880..1268977 (-) 1098 WP_087436707.1 redox-regulated ATPase YchF -
  B7P03_RS06060 (B7P03_06050) - 1268989..1269192 (-) 204 WP_048762499.1 DUF951 domain-containing protein -
  B7P03_RS06065 (B7P03_06055) - 1269213..1270091 (-) 879 WP_002448012.1 mechanosensitive ion channel family protein -
  B7P03_RS06070 (B7P03_06060) - 1270222..1271046 (-) 825 WP_087436708.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18955.44 Da        Isoelectric Point: 4.9265

>NTDB_id=225034 B7P03_RS06040 WP_049418760.1 1266535..1267053(-) (ssbA) [Staphylococcus hominis subsp. hominis strain K1]
MINRVVLVGRLTKDPEYRSTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRHQGNNDFQDYGQGFGGSQSGQNTSYNNNNNNRASNNNQSDNPFANAN
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=225034 B7P03_RS06040 WP_049418760.1 1266535..1267053(-) (ssbA) [Staphylococcus hominis subsp. hominis strain K1]
ATGATAAATCGAGTTGTATTAGTAGGTCGTTTAACTAAGGATCCAGAATACAGAAGTACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAACCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACGTTGTTGTAT
TTAGAAGACAAGCAGAAAACGTAAATAACTATCTTTCAAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATATTTGTCACTGAAGTTGTAGCGGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAAGGTGGACAACGTCATCAAGGAAATAATGATTTCCAAGATTATGGCCAAGGATTTGGTGGTTCACAATCAGGAC
AAAATACATCTTATAATAATAATAATAACAATCGTGCATCAAACAATAATCAATCAGATAACCCATTTGCAAATGCAAAT
GGCCCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.773

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.564
  ssb Glaesserella parasuis strain SC1401

34.043

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.628

0.372

Multiple sequence alignment