Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BSR25_RS09125 | Genome accession | NZ_CP020604 |
| Coordinates | 1804055..1804555 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1799055..1809555
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSR25_RS09100 (BSR25_1796) | gnd | 1800126..1801031 (-) | 906 | WP_031297004.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| BSR25_RS09105 (BSR25_1797) | - | 1801395..1802243 (+) | 849 | WP_010906370.1 | MurR/RpiR family transcriptional regulator | - |
| BSR25_RS09110 (BSR25_1798) | - | 1802281..1802589 (+) | 309 | WP_010906371.1 | DUF960 domain-containing protein | - |
| BSR25_RS09115 (BSR25_1799) | - | 1802663..1803436 (-) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| BSR25_RS09120 (BSR25_1800) | rpsR | 1803636..1803881 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| BSR25_RS09125 (BSR25_1801) | ssb | 1804055..1804555 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| BSR25_RS09130 (BSR25_1802) | rpsF | 1804585..1804878 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| BSR25_RS09135 (BSR25_1803) | - | 1805070..1805924 (-) | 855 | WP_086383558.1 | undecaprenyl-diphosphate phosphatase | - |
| BSR25_RS09140 (BSR25_1804) | - | 1806446..1807912 (+) | 1467 | WP_021214997.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=224933 BSR25_RS09125 WP_003131953.1 1804055..1804555(-) (ssb) [Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=224933 BSR25_RS09125 WP_003131953.1 1804055..1804555(-) (ssb) [Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |