Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GBS_RS04515 Genome accession   NC_004368
Coordinates   847285..848232 (+) Length   315 a.a.
NCBI ID   WP_000903650.1    Uniprot ID   A0AAW6XQQ1
Organism   Streptococcus agalactiae NEM316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 842285..853232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS_RS04490 (gbs0818) - 842634..843314 (+) 681 WP_000656582.1 VIT family protein -
  GBS_RS04495 (gbs0819) - 843465..844166 (+) 702 WP_001263956.1 glucosamine-6-phosphate deaminase -
  GBS_RS04500 (gbs0820) - 844238..845194 (-) 957 WP_000523783.1 glutathione S-transferase family protein -
  GBS_RS04505 (gbs0821) - 845290..846009 (+) 720 WP_001234962.1 16S rRNA pseudouridine(516) synthase -
  GBS_RS04510 (gbs0822) - 846082..847233 (+) 1152 WP_001086189.1 MFS transporter -
  GBS_RS04515 (gbs0823) coiA 847285..848232 (+) 948 WP_000903650.1 competence protein CoiA Machinery gene
  GBS_RS04520 (gbs0824) pepF 848248..850053 (+) 1806 WP_001282905.1 oligoendopeptidase F Regulator
  GBS_RS04525 (gbs0825) - 850248..850874 (+) 627 WP_000736939.1 HAD hydrolase-like protein -
  GBS_RS04530 (gbs0826) - 850948..851655 (+) 708 WP_000250858.1 O-methyltransferase -
  GBS_RS04535 (gbs0827) prsA 851716..852645 (+) 930 WP_000857818.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 37813.53 Da        Isoelectric Point: 9.4972

>NTDB_id=22463 GBS_RS04515 WP_000903650.1 847285..848232(+) (coiA) [Streptococcus agalactiae NEM316]
MLIAKDRQGNLINLLESHPGKGQYFCPTCCSAVRLKAGRIMRRHFAHISLKNCQFYHENESNEHLQLKAKLYMSLSRENE
TMLEHHLPEINQIADLFVNETLALEVQCSRLSEQRLRERTKAYLQADFQVRWLLGEKLWLKDRLTNLHKQFLQFSQSIGF
HIWELDLRLEVLRLKYLIYEDLRGHVYYLSKTCPLSGDVLAFLKWPYQSKNLNFYKVKQDRNIRDYVRQQLRYGNQFWLR
KQEKAYLSGQNLLTQELMMFFPQIQPPRVDTDFCQITNSLTSFYQNFTNYYQKNKNNLDQTLYPPVFYDKIVTKN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=22463 GBS_RS04515 WP_000903650.1 847285..848232(+) (coiA) [Streptococcus agalactiae NEM316]
ATGTTAATTGCTAAAGACAGACAAGGAAATTTAATTAATCTACTCGAGTCTCATCCGGGAAAGGGACAGTATTTTTGTCC
AACTTGTTGTTCAGCTGTAAGGTTAAAAGCAGGTCGAATCATGAGAAGACACTTTGCACATATTAGTCTAAAAAATTGTC
AGTTTTATCATGAAAATGAGTCTAACGAGCACTTGCAATTAAAAGCAAAGTTATATATGAGTTTAAGTAGAGAGAATGAA
ACTATGCTCGAGCATCATTTGCCAGAAATTAATCAGATTGCAGATTTATTTGTGAATGAGACATTGGCTTTAGAAGTTCA
GTGTAGCCGACTATCAGAGCAGCGACTCAGGGAGCGAACAAAAGCATATCTACAGGCAGACTTTCAAGTGAGATGGTTAC
TAGGGGAAAAACTCTGGTTAAAGGATCGTTTAACAAATCTACATAAACAATTTTTACAATTTTCTCAAAGTATCGGATTT
CATATTTGGGAGTTAGATTTGAGGTTAGAAGTACTGAGGCTAAAATATTTGATTTACGAAGATTTACGCGGACATGTCTA
TTACTTAAGTAAAACTTGCCCTCTTAGTGGAGACGTTCTAGCATTTTTGAAGTGGCCATACCAATCAAAAAATCTAAATT
TTTATAAGGTTAAACAAGACAGAAATATCAGAGATTATGTGCGTCAGCAGTTACGCTATGGCAATCAATTTTGGTTACGA
AAACAAGAAAAGGCCTACCTTTCTGGTCAGAATCTATTAACCCAAGAGCTAATGATGTTCTTCCCTCAAATACAGCCACC
ACGTGTAGATACTGATTTTTGTCAAATAACAAATTCTCTAACATCGTTTTATCAGAATTTTACAAATTATTATCAAAAAA
ATAAGAATAACTTGGACCAAACACTTTATCCCCCTGTATTTTATGATAAAATAGTCACTAAGAATTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

49.051

100

0.492
  coiA Streptococcus pneumoniae Rx1

49.051

100

0.492
  coiA Streptococcus pneumoniae D39

49.051

100

0.492
  coiA Streptococcus pneumoniae R6

49.051

100

0.492
  coiA Streptococcus mitis NCTC 12261

49.051

100

0.492
  coiA Lactococcus lactis subsp. cremoris KW2

40.062

100

0.41

Multiple sequence alignment