Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   B7L44_RS02390 Genome accession   NZ_CP020588
Coordinates   490566..491381 (+) Length   271 a.a.
NCBI ID   WP_004711686.1    Uniprot ID   A0A836Z055
Organism   Acinetobacter nosocomialis strain SSA3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 485566..496381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L44_RS20140 - 486152..486283 (-) 132 WP_102990545.1 hypothetical protein -
  B7L44_RS02360 (B7L44_02360) rpoZ 486322..486600 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  B7L44_RS02365 (B7L44_02365) gmk 486673..487302 (-) 630 WP_016803891.1 guanylate kinase -
  B7L44_RS02370 (B7L44_02370) ispH 487425..488375 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  B7L44_RS02375 (B7L44_02375) fimU 488544..489017 (+) 474 WP_016803890.1 pilus assembly FimT family protein Machinery gene
  B7L44_RS02380 (B7L44_02380) pilV 489011..489571 (+) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  B7L44_RS02385 (B7L44_02385) pilW 489571..490569 (+) 999 WP_004884688.1 PilW family protein Machinery gene
  B7L44_RS02390 (B7L44_02390) pilX 490566..491381 (+) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  B7L44_RS02395 (B7L44_02395) - 492596..495565 (+) 2970 Protein_441 PilC/PilY family type IV pilus protein -
  B7L44_RS02400 (B7L44_02400) pilY2 495578..496060 (+) 483 WP_004884685.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 28881.67 Da        Isoelectric Point: 6.6293

>NTDB_id=224545 B7L44_RS02390 WP_004711686.1 490566..491381(+) (pilX) [Acinetobacter nosocomialis strain SSA3]
MTHLRSKYIVQHHQKGATLIVVLIILLIVIAVGVLAIRVAIVSLKVATNSQIGQLNFQSSDTPIQLITQMDPTTLTNISN
VLGAALKENESHPGSEYNFCYKPVSTTVSFAQTRDASLLRAGTANNAVVEDGGVAGFCDLTTDYGSNRQAVVTQIAVSIP
TDAVNDVPGSNLPRGTNASEGTALPKSMLSTQRIRVISTSFLPAYASTSMQTLQADCLSTNSAKISDNFDSSLSNKQTLA
DCLANHNVPFSTQIQEFNYTNKLTETMAPGS

Nucleotide


Download         Length: 816 bp        

>NTDB_id=224545 B7L44_RS02390 WP_004711686.1 490566..491381(+) (pilX) [Acinetobacter nosocomialis strain SSA3]
ATGACCCATTTGAGAAGCAAATATATAGTCCAACATCATCAAAAAGGTGCGACGCTTATTGTTGTGCTTATTATTTTGTT
AATTGTTATTGCTGTGGGGGTTTTAGCCATTAGGGTGGCTATTGTTTCTTTGAAAGTTGCAACAAATAGCCAAATTGGGC
AATTAAATTTTCAATCTTCTGATACTCCTATACAGCTCATCACCCAGATGGATCCAACGACGCTTACAAATATTAGTAAT
GTGTTAGGAGCAGCACTTAAAGAAAATGAGAGTCATCCTGGATCGGAATATAATTTTTGCTATAAGCCAGTTTCGACCAC
TGTAAGTTTTGCCCAAACCCGAGATGCGAGTCTACTGCGAGCAGGAACTGCTAACAATGCCGTGGTAGAGGATGGAGGAG
TGGCTGGCTTTTGTGACCTGACCACTGATTATGGAAGTAATCGTCAAGCTGTCGTTACACAAATTGCTGTAAGCATTCCA
ACAGATGCCGTTAATGATGTTCCAGGTTCAAATTTACCACGCGGAACAAATGCGTCTGAAGGTACTGCTTTACCAAAGAG
TATGCTTTCTACACAACGCATTCGAGTGATTTCAACTTCTTTTTTACCTGCTTATGCTTCTACCTCAATGCAAACTTTGC
AAGCAGATTGTTTGAGTACAAATAGTGCCAAGATCAGCGATAACTTTGATAGCTCATTAAGTAATAAACAAACGTTAGCT
GATTGTTTGGCAAATCATAACGTACCTTTTAGTACTCAGATTCAAGAATTTAACTATACCAATAAACTTACTGAAACTAT
GGCGCCAGGTTCATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(15-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836Z055

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

82.353

100

0.827

Multiple sequence alignment