Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B7L44_RS01715 Genome accession   NZ_CP020588
Coordinates   353730..354317 (+) Length   195 a.a.
NCBI ID   WP_016803588.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain SSA3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 348730..359317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L44_RS01690 (B7L44_01690) - 349349..349702 (+) 354 WP_002053763.1 DUF1304 domain-containing protein -
  B7L44_RS01695 (B7L44_01695) - 349755..350096 (+) 342 WP_002053924.1 GlpM family protein -
  B7L44_RS01700 (B7L44_01700) tenA 350147..350821 (-) 675 WP_000899420.1 thiaminase II -
  B7L44_RS01705 (B7L44_01705) - 351085..352167 (+) 1083 WP_002054048.1 DUF475 domain-containing protein -
  B7L44_RS01710 (B7L44_01710) - 352314..353678 (+) 1365 WP_004711530.1 MFS transporter -
  B7L44_RS01715 (B7L44_01715) ssb 353730..354317 (+) 588 WP_016803588.1 single-stranded DNA-binding protein Machinery gene
  B7L44_RS01720 (B7L44_01720) - 354473..355699 (+) 1227 WP_002147669.1 site-specific integrase -
  B7L44_RS01725 (B7L44_01725) - 355692..357248 (+) 1557 WP_000163911.1 site-specific integrase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21122.93 Da        Isoelectric Point: 6.4822

>NTDB_id=224535 B7L44_RS01715 WP_016803588.1 353730..354317(+) (ssb) [Acinetobacter nosocomialis strain SSA3]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNNQGGGYGQNNGGGYGGQG
GFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=224535 B7L44_RS01715 WP_016803588.1 353730..354317(+) (ssb) [Acinetobacter nosocomialis strain SSA3]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTAACCCAGTTTTCAATCGCGACAAGTGAAGTTTGGACCGATAAAACGTCAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACGCGTCAGTGGACAGACCAAAATGGTCAGGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGT
GGTTTCGGTAATGGTGGCAACAGCCCGCAAGGTGGTGGATTTGCTCCTAAAGCGCCGCAACAACCAGCGTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.725

100

0.538
  ssb Vibrio cholerae strain A1552

43.842

100

0.456
  ssb Neisseria meningitidis MC58

37.374

100

0.379
  ssb Neisseria gonorrhoeae MS11

37.374

100

0.379

Multiple sequence alignment