Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   B5S57_RS02225 Genome accession   NZ_CP020533
Coordinates   370149..371249 (-) Length   366 a.a.
NCBI ID   WP_013867911.1    Uniprot ID   -
Organism   Vibrio anguillarum strain 425     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 365149..376249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5S57_RS02210 (B5S57_02125) glpD 365216..366760 (+) 1545 WP_019280878.1 glycerol-3-phosphate dehydrogenase -
  B5S57_RS02215 (B5S57_02130) - 366904..367569 (+) 666 WP_019282225.1 PilZ domain-containing protein -
  B5S57_RS02220 (B5S57_02135) luxQ 367587..370133 (-) 2547 WP_013867910.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  B5S57_RS02225 (B5S57_02140) luxP 370149..371249 (-) 1101 WP_013867911.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  B5S57_RS02230 (B5S57_02145) - 371474..372625 (-) 1152 WP_020977854.1 conjugal transfer protein TraF -
  B5S57_RS02235 (B5S57_02150) - 372721..373044 (-) 324 WP_013867913.1 GIY-YIG nuclease family protein -
  B5S57_RS02240 (B5S57_02155) - 373045..373698 (-) 654 WP_013867914.1 YceH family protein -
  B5S57_RS02245 (B5S57_02160) - 373756..373959 (-) 204 WP_026028336.1 hypothetical protein -
  B5S57_RS02250 (B5S57_02165) - 374150..374467 (+) 318 WP_010319897.1 DUF496 family protein -
  B5S57_RS02255 (B5S57_02170) - 374775..375026 (+) 252 WP_013867916.1 YgjV family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41679.28 Da        Isoelectric Point: 6.0602

>NTDB_id=223937 B5S57_RS02225 WP_013867911.1 370149..371249(-) (luxP) [Vibrio anguillarum strain 425]
MRKILLLSFVFSVSLAASTQAAAQVLNGYWRYQEFLDLNPAQQALTDQMIQAVRQPPAVLSIEQDKPIHISVVYPGQQVS
DYWARNIKAFEMRLDELGIRYQINQVFTRPNVDIRQQSLSLMEAIRNKSDYLVFTLDTIRHRKFIEQLLSSNQTKIILQN
ITTPVKSWGDRQPFMYVGFDHEIGTMKLVDYYKKSAPKNSAYSVLYYSEGYVSDARGDSFIQEMSRDSKYHLASSFYTKA
TRDSAFDATLRILKQTPDINFIYACSTDVALGAMDALQQQNREDITLNGWGGGEAELDALQNSTLDVTIMRVNDDAGVAM
AEAIKWDLEGKPVPTVYSGDFELVTKEVSSAYIEKLKKRAFRYSDH

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=223937 B5S57_RS02225 WP_013867911.1 370149..371249(-) (luxP) [Vibrio anguillarum strain 425]
ATGAGAAAAATCCTGCTCCTTTCATTTGTGTTCAGTGTCAGTTTGGCAGCCTCCACTCAGGCTGCAGCGCAAGTTTTAAA
TGGCTATTGGCGATATCAAGAGTTTTTAGATCTTAATCCTGCGCAACAGGCTCTTACCGACCAGATGATACAGGCAGTGC
GTCAACCTCCCGCTGTACTCTCAATAGAGCAAGATAAACCTATTCATATTTCTGTTGTTTATCCAGGTCAACAAGTTTCC
GATTATTGGGCGCGCAATATCAAAGCCTTTGAGATGCGTTTAGACGAACTTGGGATTAGATACCAAATTAACCAAGTATT
CACTCGTCCGAATGTCGATATTCGCCAACAAAGTTTATCGTTGATGGAAGCGATCAGAAACAAATCCGATTACTTGGTGT
TTACGCTTGATACCATCCGTCACCGTAAATTTATCGAGCAGTTGTTAAGTTCAAATCAAACCAAAATCATTCTGCAAAAT
ATCACTACGCCAGTAAAAAGTTGGGGAGATCGCCAGCCTTTTATGTACGTGGGGTTTGATCATGAAATTGGCACAATGAA
ACTGGTGGATTACTACAAAAAGTCGGCGCCAAAGAATAGTGCTTATTCCGTACTCTATTATTCTGAAGGCTATGTCAGCG
ATGCACGCGGTGATAGTTTTATCCAAGAAATGAGTCGAGACAGCAAATATCACTTGGCCTCTTCGTTTTATACAAAAGCG
ACACGAGATAGTGCATTTGATGCAACTTTGCGTATTCTTAAACAAACACCAGATATTAATTTTATTTACGCATGCTCTAC
TGATGTTGCACTCGGTGCCATGGATGCGTTGCAGCAGCAAAATAGAGAAGATATTACGTTAAACGGCTGGGGCGGTGGTG
AGGCTGAATTGGACGCGCTGCAAAATAGCACACTTGATGTGACTATCATGCGTGTCAATGATGACGCCGGTGTTGCTATG
GCGGAAGCCATTAAGTGGGATCTTGAAGGAAAGCCGGTACCTACGGTTTACTCTGGTGATTTTGAATTGGTAACCAAAGA
GGTCTCTTCAGCGTATATTGAAAAGCTCAAAAAACGAGCATTTCGTTACTCTGACCATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.889

98.361

0.628

Multiple sequence alignment