Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   CHELV3228_RS08595 Genome accession   NZ_CP020478
Coordinates   1622970..1624583 (-) Length   537 a.a.
NCBI ID   WP_234981007.1    Uniprot ID   -
Organism   Campylobacter helveticus strain ATCC 51209     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1617970..1629583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHELV3228_RS08580 (CHELV3228_1687) - 1619138..1619770 (+) 633 WP_082200588.1 hypothetical protein -
  CHELV3228_RS08585 (CHELV3228_1688) - 1619928..1621760 (+) 1833 WP_082200589.1 flagellin -
  CHELV3228_RS08590 (CHELV3228_1689) ctsF 1621786..1622973 (-) 1188 WP_082200590.1 type II secretion system F family protein Machinery gene
  CHELV3228_RS08595 (CHELV3228_1690) ctsE 1622970..1624583 (-) 1614 WP_234981007.1 GspE/PulE family protein Machinery gene
  CHELV3228_RS08600 (CHELV3228_1691) - 1624583..1625149 (-) 567 WP_082200592.1 transformation system protein -
  CHELV3228_RS08605 (CHELV3228_1692) - 1625152..1625757 (-) 606 WP_082200593.1 ATP-binding protein -
  CHELV3228_RS08610 (CHELV3228_1693) ctsD 1625750..1627159 (-) 1410 WP_082200594.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CHELV3228_RS08615 (CHELV3228_1694) - 1627137..1627436 (-) 300 WP_082200595.1 transformation system protein -

Sequence

Protein


Download         Length: 537 a.a.        Molecular weight: 61155.02 Da        Isoelectric Point: 6.0205

>NTDB_id=223627 CHELV3228_RS08595 WP_234981007.1 1622970..1624583(-) (ctsE) [Campylobacter helveticus strain ATCC 51209]
MEFLKNLGFNEEVQEGFKDEALRRFLFELYLKDGLDLNVLFSNLGVRSEEFLRALAQHLGLEFVEFEEIDENLCDLFAFS
LLWQNQILPLQKDAESIFILSAKPLNLELLSKIEHLFRSKFIKNALCDVYQLNQNLNKLYIKQRLKELSTNLKQELNANL
KEDGQSSVSLLFEFILQEALKLNASDVHIESLENEALIRFRVDGILRLFCTLEEQLYQALVFHIKLLAHLNVAESRKAQD
GSFNKSFEGVEYDFRISTLPLQKGESVVLRILKQDLKLLSLENLHFSKENLTLVQKNIKKPFGMILLTGPTGSGKSTTLY
ACLKSLACVEKKIITAEEPIEYKMPQIQQIALNSKAGLDFSNALRAILRQDPDVIMVGEIRDEESLDIALKGAQTGHLIL
STLHTNDALSTIERLLDMKAKPYLIASSLNLIIAQRLVRKLCPHCKIKSVRNDEFKGEFYEAKGCENCHFSGFLGRELIS
ECLELDEGLKELVRKNASKNELLNHAKTRGFLSMFELGLEKARLGIISIDELMRVVG

Nucleotide


Download         Length: 1614 bp        

>NTDB_id=223627 CHELV3228_RS08595 WP_234981007.1 1622970..1624583(-) (ctsE) [Campylobacter helveticus strain ATCC 51209]
ATGGAATTTTTAAAGAATTTAGGTTTTAATGAAGAGGTGCAAGAGGGCTTTAAAGATGAAGCTTTGAGGCGTTTTTTGTT
TGAGCTTTATTTAAAAGATGGGCTTGATTTAAATGTGCTTTTTTCAAATTTGGGTGTAAGGAGCGAGGAATTTTTAAGGG
CTTTGGCACAGCATTTAGGCTTGGAATTTGTAGAATTTGAGGAGATAGATGAGAATTTATGCGATTTGTTTGCCTTTTCT
TTGCTTTGGCAAAATCAAATTCTCCCCCTACAAAAAGATGCAGAAAGCATTTTTATCCTTTCTGCTAAACCTCTAAATTT
AGAGCTTTTAAGTAAGATAGAGCATCTTTTTCGCTCCAAATTTATCAAAAATGCGCTTTGTGATGTTTATCAGTTAAATC
AAAACTTAAACAAGCTTTATATCAAGCAAAGATTAAAAGAATTAAGCACCAATTTAAAGCAAGAATTAAATGCGAATTTG
AAAGAGGACGGGCAAAGTAGCGTGAGCTTGCTATTTGAGTTTATCTTGCAAGAAGCATTAAAGCTAAATGCAAGCGATGT
GCATATAGAAAGCTTGGAAAATGAGGCTTTAATACGCTTTCGTGTGGATGGAATTTTACGCCTTTTTTGCACTTTAGAGG
AGCAGCTTTATCAAGCCCTAGTTTTTCACATTAAGCTTTTGGCGCACTTAAATGTTGCTGAGAGTAGAAAAGCACAAGAT
GGAAGTTTTAATAAGAGCTTTGAGGGTGTGGAGTATGATTTTCGTATTTCAACCTTACCTTTGCAAAAGGGCGAAAGTGT
GGTGCTTAGGATATTAAAGCAGGATTTGAAGCTTTTAAGTCTTGAAAACTTGCATTTTTCTAAAGAAAATTTAACTTTAG
TGCAGAAAAATATCAAAAAGCCTTTTGGTATGATACTACTAACCGGTCCCACTGGTAGCGGTAAAAGCACGACTTTATAT
GCTTGTTTAAAAAGTCTTGCCTGTGTGGAGAAGAAAATCATTACCGCAGAAGAACCCATAGAGTATAAAATGCCTCAAAT
TCAGCAAATCGCGCTTAATTCTAAGGCGGGACTTGATTTTAGTAATGCCTTAAGAGCGATTTTAAGGCAGGATCCTGATG
TGATTATGGTGGGGGAAATCCGCGATGAAGAAAGCCTTGATATAGCCCTTAAAGGCGCACAAACGGGACATTTAATCCTT
AGCACTTTACATACAAATGACGCGCTTTCTACCATAGAGCGTTTGCTTGATATGAAAGCAAAGCCTTATTTAATCGCCTC
TTCGCTTAATCTCATCATTGCCCAACGCCTTGTAAGAAAGCTTTGTCCGCATTGTAAAATTAAAAGTGTGAGAAATGATG
AATTTAAAGGCGAGTTTTATGAAGCTAAGGGGTGCGAGAATTGCCATTTTAGCGGCTTTTTGGGTAGGGAATTAATTAGC
GAGTGTTTGGAGCTTGATGAGGGCTTAAAAGAATTAGTGCGTAAAAATGCAAGTAAAAATGAGCTTTTAAACCACGCAAA
AACAAGAGGCTTTTTAAGTATGTTTGAGCTAGGACTTGAAAAAGCGAGGCTTGGGATTATTAGCATTGATGAGCTTATGA
GGGTGGTTGGGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(45-144)

Type II/IV secretion system protein (T2SSE)

(175-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

54.688

95.345

0.521
  pilB Legionella pneumophila strain ERS1305867

37.383

99.628

0.372
  pilB Vibrio cholerae strain A1552

37.765

96.648

0.365
  pilB Vibrio campbellii strain DS40M4

36.742

98.324

0.361

Multiple sequence alignment