Detailed information NTG0223628

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: CHELV3228_RS08610
• Genome accession: NZ_CP020478
• Coordinates: 1625750..1627159 (-)
• Length: 469 a.a.
• NCBI ID: WP_082200594.1
• Uniprot ID: -
• Organism: Campylobacter helveticus strain ATCC 51209
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1620750..1632159

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CHELV3228_RS08590 (CHELV3228_1689)	ctsF	1621786..1622973 (-)	1188	WP_082200590.1	type II secretion system F family protein	Machinery gene
CHELV3228_RS08595 (CHELV3228_1690)	ctsE	1622970..1624583 (-)	1614	WP_234981007.1	GspE/PulE family protein	Machinery gene
CHELV3228_RS08600 (CHELV3228_1691)	-	1624583..1625149 (-)	567	WP_082200592.1	transformation system protein	-
CHELV3228_RS08605 (CHELV3228_1692)	-	1625152..1625757 (-)	606	WP_082200593.1	ATP-binding protein	-
CHELV3228_RS08610 (CHELV3228_1693)	ctsD	1625750..1627159 (-)	1410	WP_082200594.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CHELV3228_RS08615 (CHELV3228_1694)	-	1627137..1627436 (-)	300	WP_082200595.1	transformation system protein	-
CHELV3228_RS08620 (CHELV3228_1695)	nifJ	1627433..1630996 (-)	3564	WP_082200596.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-

Sequence

Protein

• Length: 469 a.a.
• Molecular weight: 52576.07 Da
• Isoelectric Point: 4.9996

>NTDB_id=223628 CHELV3228_RS08610 WP_082200594.1 1625750..1627159(-) (ctsD) [Campylobacter helveticus strain ATCC 51209]
MLRLVLIEFVFCLSFLYGFDCQKRLFDINIKESLSIEEALDELASYCTFSIVVKDEFAKNELTKMQKSLYIHQMTLEELF
KLLLKENNLNYEFDGKILSIWGISTQIFKLSYITSIREGQSIIKASVDSKPRQNEADLSDENDDNMIKSMEKFDFWQNIE
KEITTLLNAYGETKAPIINANAGIIIVTGTPIQLKKVGEYINRLENRLKKQVIIDVSIIAVSLNENHSSGINWQNFNVDF
ASTTQNGQGSFIQLQSGQGFVKNLGLRANLNFSAVLNFLSQNGKTQVLSSPKLMALNNQQAIISVGDTINYQVKESSKGT
ENGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPRTIAPDTIQKKLSTVVSMENNQTL
ILGGLISHNQIKEGSEVSFLSKIPLLGLLFSGDESSSNSTEIVFIITPSIVDKQMGVLSLKDLGFKHYE

Nucleotide

• Length: 1410 bp

>NTDB_id=223628 CHELV3228_RS08610 WP_082200594.1 1625750..1627159(-) (ctsD) [Campylobacter helveticus strain ATCC 51209]
ATGCTAAGATTAGTATTAATTGAATTTGTTTTTTGCTTGAGTTTTCTTTATGGTTTTGATTGTCAAAAAAGACTTTTTGA
TATTAATATAAAAGAAAGTTTAAGTATAGAGGAAGCACTTGATGAACTTGCGAGTTATTGCACCTTTAGTATTGTTGTAA
AAGATGAATTTGCTAAAAATGAGCTGACTAAAATGCAAAAAAGTTTATATATTCATCAAATGACCCTAGAAGAGCTTTTT
AAACTTTTGCTGAAAGAAAATAATTTAAACTATGAATTTGATGGAAAAATTTTAAGCATTTGGGGAATTTCAACTCAAAT
TTTTAAGTTGAGCTACATCACATCTATACGCGAGGGACAAAGCATTATCAAGGCTTCTGTGGATTCTAAGCCAAGACAAA
ATGAGGCTGATTTAAGCGATGAAAATGATGATAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAAATCACAACCCTACTTAATGCTTATGGTGAGACTAAAGCGCCGATTATCAATGCAAATGCTGGAATTATCATCGT
TACAGGCACACCTATCCAGCTTAAAAAAGTGGGAGAGTATATTAATAGACTTGAAAATAGACTTAAAAAGCAAGTGATTA
TCGATGTGAGCATCATTGCGGTGAGTTTAAATGAAAATCATTCAAGTGGGATAAATTGGCAAAATTTCAATGTCGATTTT
GCTAGCACAACGCAAAATGGGCAAGGCTCTTTCATCCAGCTTCAAAGCGGACAAGGTTTTGTGAAAAATTTGGGTTTAAG
GGCAAATCTTAATTTTAGTGCCGTGTTAAATTTTCTTTCTCAAAATGGCAAAACGCAAGTGCTTTCAAGTCCAAAGCTTA
TGGCTTTAAATAACCAACAAGCCATCATTTCAGTAGGCGATACGATTAATTACCAAGTAAAAGAAAGCTCCAAAGGCACA
GAAAATGGCACAACTGTGAGTGAGAGTTTTAGCAATTATTCTATTTTTGTGGGAATTTTATTAAGTATTTTGCCCGAAAT
TTCAGATGATAATAAAATTATGCTTCGTATTAATCCAAGCCTAAGCGATTTTAAATATCCTCAAGACAATCAAAGGCAAA
GCAGTCCCCGCACCATAGCCCCAGATACCATACAAAAAAAGCTTTCCACCGTTGTTTCTATGGAAAATAACCAAACGCTA
ATTTTAGGCGGACTCATCTCACATAATCAAATCAAAGAAGGGAGTGAAGTAAGCTTTCTTTCTAAAATTCCACTGCTTGG
GCTTTTATTTAGTGGCGATGAGTCAAGTTCAAATAGCACCGAAATCGTTTTCATCATCACGCCTAGCATAGTGGATAAAC
AAATGGGTGTTTTAAGTCTTAAGGATTTAGGGTTTAAGCATTATGAGTGA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (279-452)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	72.939	100	0.736