Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ROSMUCSMR3_RS01265 Genome accession   NZ_CP020474
Coordinates   253118..253630 (+) Length   170 a.a.
NCBI ID   WP_081506188.1    Uniprot ID   -
Organism   Roseovarius mucosus strain SMR3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 248118..258630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROSMUCSMR3_RS01245 (ROSMUCSMR3_00249) - 248391..249554 (-) 1164 WP_008281014.1 isovaleryl-CoA dehydrogenase -
  ROSMUCSMR3_RS01250 (ROSMUCSMR3_00250) - 249761..250567 (+) 807 WP_008281015.1 helix-turn-helix transcriptional regulator -
  ROSMUCSMR3_RS01255 (ROSMUCSMR3_00251) - 250661..252322 (+) 1662 WP_081506186.1 ABC transporter substrate-binding protein -
  ROSMUCSMR3_RS01260 (ROSMUCSMR3_00252) - 252335..252925 (-) 591 WP_081506187.1 lytic transglycosylase domain-containing protein -
  ROSMUCSMR3_RS01265 (ROSMUCSMR3_00253) ssb 253118..253630 (+) 513 WP_081506188.1 single-stranded DNA-binding protein Machinery gene
  ROSMUCSMR3_RS01270 (ROSMUCSMR3_00254) typA 253948..255768 (+) 1821 WP_008281019.1 translational GTPase TypA -
  ROSMUCSMR3_RS01275 (ROSMUCSMR3_00255) - 255805..256350 (-) 546 WP_081506189.1 histidine phosphatase family protein -
  ROSMUCSMR3_RS01280 (ROSMUCSMR3_00256) - 256404..256691 (-) 288 WP_081506190.1 DUF1330 domain-containing protein -
  ROSMUCSMR3_RS01285 (ROSMUCSMR3_00257) - 256716..257000 (-) 285 WP_008281023.1 DUF1330 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18262.02 Da        Isoelectric Point: 5.3255

>NTDB_id=223599 ROSMUCSMR3_RS01265 WP_081506188.1 253118..253630(+) (ssb) [Roseovarius mucosus strain SMR3]
MSGSVNKVILIGNLGRDPEVRTFQNGGKVCNLRIATSETWKDRNSGERRERTEWHTVAIFSEGLVRVAEQYLRKGSKVYL
EGKLQTRKWQDQSGQDKYSTEIVLQGFDATLVMLDGRGEGGASGGGGSYGGGQDQGYGGDYGGDYGSSPAPASSGGGSRP
ARDMDDEIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=223599 ROSMUCSMR3_RS01265 WP_081506188.1 253118..253630(+) (ssb) [Roseovarius mucosus strain SMR3]
ATGTCCGGCTCTGTTAACAAGGTAATTCTCATCGGCAATCTGGGCCGCGACCCCGAGGTCCGGACCTTTCAGAACGGCGG
CAAGGTGTGCAACCTGCGCATCGCCACCTCCGAAACGTGGAAGGATCGCAACAGCGGCGAACGCCGCGAGCGCACCGAAT
GGCACACCGTCGCCATCTTCTCCGAAGGGTTGGTGCGCGTGGCCGAGCAGTATCTGCGCAAAGGCTCCAAGGTTTATTTG
GAGGGCAAGCTGCAAACCCGCAAATGGCAGGATCAGTCCGGTCAGGACAAGTACAGCACCGAAATCGTGCTGCAAGGCTT
TGATGCAACCCTCGTCATGCTTGATGGGCGTGGCGAAGGCGGGGCCAGTGGCGGCGGCGGCAGCTATGGCGGCGGTCAGG
ATCAGGGCTACGGCGGCGATTATGGCGGCGACTACGGGTCTTCCCCGGCCCCCGCATCAAGCGGCGGTGGGTCGCGCCCC
GCGCGCGATATGGATGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.571

100

0.541
  ssb Glaesserella parasuis strain SC1401

48.352

100

0.518
  ssb Neisseria meningitidis MC58

45.604

100

0.488
  ssb Neisseria gonorrhoeae MS11

44.086

100

0.482

Multiple sequence alignment