Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   B5S50_RS21930 Genome accession   NZ_CP020473
Coordinates   1922868..1923008 (+) Length   46 a.a.
NCBI ID   WP_217303790.1    Uniprot ID   -
Organism   Clostridium sp. 001     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1917868..1928008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5S50_RS08755 (B5S50_08660) - 1918436..1918804 (+) 369 WP_065078361.1 hypothetical protein -
  B5S50_RS08760 (B5S50_08665) istA 1919094..1920659 (+) 1566 WP_217301825.1 IS21 family transposase -
  B5S50_RS08765 (B5S50_08670) - 1920729..1921894 (+) 1166 WP_243121154.1 IS3 family transposase -
  B5S50_RS08770 (B5S50_08675) - 1921900..1922703 (+) 804 WP_254306644.1 ATP-binding protein -
  B5S50_RS21930 (B5S50_08680) qstR 1922868..1923008 (+) 141 WP_217303790.1 response regulator transcription factor Regulator
  B5S50_RS08780 (B5S50_08685) - 1923115..1924074 (+) 960 WP_065078363.1 M28 family peptidase -
  B5S50_RS08785 (B5S50_08690) - 1924486..1925763 (-) 1278 WP_217303612.1 FtsX-like permease family protein -
  B5S50_RS08790 (B5S50_08695) - 1925765..1926517 (-) 753 WP_065078365.1 ABC transporter ATP-binding protein -
  B5S50_RS08795 (B5S50_08700) - 1926523..1927584 (-) 1062 WP_065078366.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5370.30 Da        Isoelectric Point: 10.7568

>NTDB_id=223598 B5S50_RS21930 WP_217303790.1 1922868..1923008(+) (qstR) [Clostridium sp. 001]
MGLSNKEIGNKLFISPNTVKNHVYNIYKKVNVKNKVELINLINRRD

Nucleotide


Download         Length: 141 bp        

>NTDB_id=223598 B5S50_RS21930 WP_217303790.1 1922868..1923008(+) (qstR) [Clostridium sp. 001]
ATGGGTTTAAGCAATAAGGAAATTGGTAACAAATTATTTATATCCCCTAATACTGTAAAAAATCATGTTTATAATATTTA
TAAAAAAGTAAATGTTAAAAATAAAGTAGAGCTTATAAACCTTATAAATAGGCGAGACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(2-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

53.488

93.478

0.5
  degU Bacillus subtilis subsp. subtilis str. 168

52.632

82.609

0.435
  qstR Vibrio parahaemolyticus RIMD 2210633

47.368

82.609

0.391
  qstR Vibrio campbellii strain DS40M4

41.86

93.478

0.391

Multiple sequence alignment