Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | A6J88_RS19815 | Genome accession | NZ_CP020452 |
| Coordinates | 1127358..1128221 (+) | Length | 287 a.a. |
| NCBI ID | WP_080613751.1 | Uniprot ID | - |
| Organism | Neisseria mucosa strain FDAARGOS_260 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1122358..1133221
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J88_RS19795 (A6J88_05710) | - | 1123202..1123549 (+) | 348 | WP_240594077.1 | YadA C-terminal domain-containing protein | - |
| A6J88_RS19800 (A6J88_05715) | - | 1123617..1124084 (+) | 468 | WP_049226372.1 | outer membrane protein assembly factor BamE | - |
| A6J88_RS19805 (A6J88_05720) | pilF | 1124364..1126043 (+) | 1680 | WP_060974402.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| A6J88_RS19810 (A6J88_05725) | pilG | 1126115..1127356 (+) | 1242 | WP_060974403.1 | type II secretion system F family protein | Machinery gene |
| A6J88_RS19815 (A6J88_05730) | pilD | 1127358..1128221 (+) | 864 | WP_080613751.1 | prepilin peptidase | Machinery gene |
| A6J88_RS19820 (A6J88_05735) | coaE | 1128223..1128852 (+) | 630 | WP_080613752.1 | dephospho-CoA kinase | - |
| A6J88_RS19825 (A6J88_05740) | yacG | 1128907..1129101 (+) | 195 | WP_045074220.1 | DNA gyrase inhibitor YacG | - |
| A6J88_RS19830 (A6J88_05745) | ribF | 1129203..1130132 (-) | 930 | WP_080613753.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| A6J88_RS19835 (A6J88_05750) | - | 1130237..1130629 (-) | 393 | WP_080613754.1 | hypothetical protein | - |
| A6J88_RS19840 (A6J88_05755) | ispH | 1130774..1131742 (-) | 969 | WP_080613755.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| A6J88_RS19845 (A6J88_05760) | lspA | 1131769..1132287 (-) | 519 | WP_080613756.1 | signal peptidase II | - |
| A6J88_RS19850 (A6J88_05765) | - | 1132541..1132912 (+) | 372 | WP_080613757.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 287 a.a. Molecular weight: 31429.81 Da Isoelectric Point: 8.5973
>NTDB_id=223303 A6J88_RS19815 WP_080613751.1 1127358..1128221(+) (pilD) [Neisseria mucosa strain FDAARGOS_260]
MLESLDTLAPFAIPLAVIVGLLIGSFLNVVIYRVPVMMERGWTQFAKEHLQLELTEEEQQPFNLMKPDSRCPKCHAPVKA
WQNIPIVSYLMLGGKCGSCKTPISIRYPLIELLAGILFGVVAWQYGWTMAAFGGLILTAILIALTFIDADTQYLPDSLTL
PLIWLGLLFNLSGTFVPLKSAVLGVVFGYMSLWLLCFIYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLVFMAALIGL
IGAIIRRVAKGQYFAFGPSLAIAGWIILVANEPVHRAVTWWLTKSGF
MLESLDTLAPFAIPLAVIVGLLIGSFLNVVIYRVPVMMERGWTQFAKEHLQLELTEEEQQPFNLMKPDSRCPKCHAPVKA
WQNIPIVSYLMLGGKCGSCKTPISIRYPLIELLAGILFGVVAWQYGWTMAAFGGLILTAILIALTFIDADTQYLPDSLTL
PLIWLGLLFNLSGTFVPLKSAVLGVVFGYMSLWLLCFIYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLVFMAALIGL
IGAIIRRVAKGQYFAFGPSLAIAGWIILVANEPVHRAVTWWLTKSGF
Nucleotide
Download Length: 864 bp
>NTDB_id=223303 A6J88_RS19815 WP_080613751.1 1127358..1128221(+) (pilD) [Neisseria mucosa strain FDAARGOS_260]
ATGTTGGAATCTTTGGATACATTAGCGCCATTTGCTATTCCATTAGCTGTCATTGTTGGTTTGTTAATCGGAAGTTTTCT
TAATGTTGTCATTTACCGCGTTCCTGTCATGATGGAACGCGGCTGGACTCAGTTTGCGAAAGAGCATTTGCAACTTGAAT
TAACGGAAGAAGAACAGCAACCATTCAATTTGATGAAGCCGGATTCCCGCTGCCCCAAGTGTCATGCTCCGGTAAAGGCT
TGGCAAAATATTCCGATTGTCAGTTATCTGATGCTTGGTGGTAAATGTGGCTCGTGTAAAACGCCCATCAGCATCCGTTA
TCCCTTAATCGAATTATTGGCCGGTATATTGTTTGGCGTAGTGGCGTGGCAATATGGCTGGACGATGGCGGCATTCGGTG
GGTTGATATTGACTGCAATATTGATTGCATTGACCTTTATCGATGCGGATACTCAATATTTACCTGACAGCCTGACCCTG
CCGTTGATATGGTTAGGCTTACTGTTTAATTTAAGCGGTACTTTTGTTCCATTGAAATCTGCCGTTTTAGGCGTGGTTTT
CGGCTATATGAGCTTATGGCTGTTGTGTTTTATCTATAAGCTTTTGACTGGAAAAATCGGTATGGGTAACGGCGATTTTA
AATTGCTGGCCGCACTAGGTGCATGGCTTGGTGTCGGCATTTTACCTGTATTGGTCTTTATGGCAGCGTTAATTGGTCTG
ATTGGAGCGATTATCAGACGGGTTGCCAAAGGACAATATTTTGCTTTCGGTCCGAGTTTGGCTATTGCCGGCTGGATTAT
TCTGGTAGCTAACGAGCCGGTACATCGTGCCGTCACTTGGTGGCTGACCAAATCAGGGTTTTAA
ATGTTGGAATCTTTGGATACATTAGCGCCATTTGCTATTCCATTAGCTGTCATTGTTGGTTTGTTAATCGGAAGTTTTCT
TAATGTTGTCATTTACCGCGTTCCTGTCATGATGGAACGCGGCTGGACTCAGTTTGCGAAAGAGCATTTGCAACTTGAAT
TAACGGAAGAAGAACAGCAACCATTCAATTTGATGAAGCCGGATTCCCGCTGCCCCAAGTGTCATGCTCCGGTAAAGGCT
TGGCAAAATATTCCGATTGTCAGTTATCTGATGCTTGGTGGTAAATGTGGCTCGTGTAAAACGCCCATCAGCATCCGTTA
TCCCTTAATCGAATTATTGGCCGGTATATTGTTTGGCGTAGTGGCGTGGCAATATGGCTGGACGATGGCGGCATTCGGTG
GGTTGATATTGACTGCAATATTGATTGCATTGACCTTTATCGATGCGGATACTCAATATTTACCTGACAGCCTGACCCTG
CCGTTGATATGGTTAGGCTTACTGTTTAATTTAAGCGGTACTTTTGTTCCATTGAAATCTGCCGTTTTAGGCGTGGTTTT
CGGCTATATGAGCTTATGGCTGTTGTGTTTTATCTATAAGCTTTTGACTGGAAAAATCGGTATGGGTAACGGCGATTTTA
AATTGCTGGCCGCACTAGGTGCATGGCTTGGTGTCGGCATTTTACCTGTATTGGTCTTTATGGCAGCGTTAATTGGTCTG
ATTGGAGCGATTATCAGACGGGTTGCCAAAGGACAATATTTTGCTTTCGGTCCGAGTTTGGCTATTGCCGGCTGGATTAT
TCTGGTAGCTAACGAGCCGGTACATCGTGCCGTCACTTGGTGGCTGACCAAATCAGGGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Neisseria gonorrhoeae MS11 |
73.498 |
98.606 |
0.725 |
| pilD | Vibrio cholerae strain A1552 |
47.636 |
95.819 |
0.456 |
| pilD | Acinetobacter nosocomialis M2 |
49.042 |
90.941 |
0.446 |
| pilD | Acinetobacter baumannii D1279779 |
48.659 |
90.941 |
0.443 |
| pilD | Vibrio campbellii strain DS40M4 |
44 |
95.819 |
0.422 |