Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J88_RS17860 Genome accession   NZ_CP020452
Coordinates   743127..743426 (+) Length   99 a.a.
NCBI ID   WP_080613622.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_260     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 743751..745211 743127..743426 flank 325


Gene organization within MGE regions


Location: 743127..745211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J88_RS17860 (A6J88_03795) comE 743127..743426 (+) 300 WP_080613622.1 ComEA family DNA-binding protein Machinery gene
  A6J88_RS17865 (A6J88_13960) - 743751..743894 (-) 144 Protein_713 IS5/IS1182 family transposase -
  A6J88_RS17870 (A6J88_03805) - 743963..744313 (+) 351 WP_003756443.1 helix-turn-helix domain-containing protein -
  A6J88_RS17875 (A6J88_03810) - 744316..744957 (+) 642 WP_240594071.1 IS3 family transposase -
  A6J88_RS17880 (A6J88_03815) - 744912..745211 (+) 300 Protein_716 IS30 family transposase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10255.98 Da        Isoelectric Point: 10.6262

>NTDB_id=223293 A6J88_RS17860 WP_080613622.1 743127..743426(+) (comE) [Neisseria mucosa strain FDAARGOS_260]
MKKFLFAALSVLTASLSLAAVNINTASPSELEALPGIGPAKAKAIADYRQQHGAFKSVEELKNVKGIGEGIFSKLKTEAT
VAPAPANPKAKNAVPSPKK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=223293 A6J88_RS17860 WP_080613622.1 743127..743426(+) (comE) [Neisseria mucosa strain FDAARGOS_260]
ATGAAAAAATTCCTCTTTGCCGCACTCTCCGTTCTGACCGCCTCGCTGTCGCTGGCCGCTGTCAACATCAATACCGCTTC
CCCGTCCGAATTGGAAGCCCTGCCCGGCATCGGTCCGGCCAAAGCCAAAGCCATTGCGGACTACCGTCAACAACATGGTG
CCTTCAAATCGGTTGAGGAGCTCAAAAACGTCAAAGGCATCGGCGAGGGTATCTTCTCCAAACTGAAGACCGAAGCAACC
GTCGCTCCCGCACCTGCCAACCCAAAAGCTAAAAACGCCGTCCCATCACCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

60

100

0.606
  comE Neisseria gonorrhoeae MS11

60

100

0.606
  comE Neisseria gonorrhoeae MS11

60

100

0.606
  comE Neisseria gonorrhoeae MS11

60

100

0.606
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.086

81.818

0.434
  comEA Vibrio parahaemolyticus RIMD 2210633

45.349

86.869

0.394

Multiple sequence alignment