Detailed information
Bioinformatically predicted
Overview
| Name | comYF | Type | Machinery gene |
| Locus tag | A6J87_RS05965 | Genome accession | NZ_CP020451 |
| Coordinates | 1160114..1160551 (+) | Length | 145 a.a. |
| NCBI ID | WP_080611747.1 | Uniprot ID | - |
| Organism | Streptococcus salivarius strain FDAARGOS_259 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1155114..1165551
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J87_RS05920 (A6J87_05895) | - | 1155416..1155850 (+) | 435 | WP_080611722.1 | phage holin family protein | - |
| A6J87_RS05925 (A6J87_05900) | - | 1155843..1156073 (+) | 231 | WP_080611725.1 | phage holin | - |
| A6J87_RS05930 (A6J87_05905) | - | 1156078..1156530 (+) | 453 | WP_080611727.1 | hypothetical protein | - |
| A6J87_RS05935 (A6J87_05910) | - | 1156544..1156873 (+) | 330 | WP_080611728.1 | hypothetical protein | - |
| A6J87_RS05940 (A6J87_05915) | - | 1156878..1157150 (+) | 273 | WP_080611730.1 | hypothetical protein | - |
| A6J87_RS05945 (A6J87_05920) | - | 1157169..1158554 (+) | 1386 | WP_080611731.1 | GH25 family lysozyme | - |
| A6J87_RS05950 (A6J87_05925) | comYC | 1159175..1159477 (+) | 303 | WP_080611741.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| A6J87_RS05955 (A6J87_05930) | comYD | 1159437..1159865 (+) | 429 | WP_263969676.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| A6J87_RS05960 (A6J87_05935) | comGE | 1159837..1160127 (+) | 291 | WP_080611745.1 | competence type IV pilus minor pilin ComGE | - |
| A6J87_RS05965 (A6J87_05940) | comYF | 1160114..1160551 (+) | 438 | WP_080611747.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| A6J87_RS05970 (A6J87_05945) | comGG | 1160529..1160846 (+) | 318 | WP_060973072.1 | competence type IV pilus minor pilin ComGG | - |
| A6J87_RS05975 (A6J87_05950) | comYH | 1160891..1161847 (+) | 957 | WP_080611749.1 | class I SAM-dependent methyltransferase | Machinery gene |
| A6J87_RS05980 (A6J87_05955) | - | 1161904..1163097 (+) | 1194 | WP_073689934.1 | acetate kinase | - |
| A6J87_RS05985 (A6J87_05960) | - | 1163348..1163545 (+) | 198 | WP_013991261.1 | helix-turn-helix transcriptional regulator | - |
| A6J87_RS05990 (A6J87_05965) | - | 1163557..1164213 (+) | 657 | WP_064523497.1 | CPBP family intramembrane glutamic endopeptidase | - |
| A6J87_RS05995 (A6J87_05970) | - | 1164291..1164737 (+) | 447 | WP_013991259.1 | hypothetical protein | - |
| A6J87_RS06000 (A6J87_05975) | - | 1164850..1165512 (+) | 663 | WP_013991258.1 | CPBP family intramembrane glutamic endopeptidase | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 16212.63 Da Isoelectric Point: 8.4658
>NTDB_id=223256 A6J87_RS05965 WP_080611747.1 1160114..1160551(+) (comYF) [Streptococcus salivarius strain FDAARGOS_259]
MSLNSKVRAFTLLECLVALLVIAGSIQVYQGLTTVLVSNVKQVKQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSATDFRKTNADGRGYQPMLFNVKSSTISQNNQIVTIQVTLKNGLQRSFVYAFEKTG
MSLNSKVRAFTLLECLVALLVIAGSIQVYQGLTTVLVSNVKQVKQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSATDFRKTNADGRGYQPMLFNVKSSTISQNNQIVTIQVTLKNGLQRSFVYAFEKTG
Nucleotide
Download Length: 438 bp
>NTDB_id=223256 A6J87_RS05965 WP_080611747.1 1160114..1160551(+) (comYF) [Streptococcus salivarius strain FDAARGOS_259]
ATGTCTCTAAATAGTAAGGTCCGCGCCTTTACCCTCTTGGAATGTCTAGTAGCCTTGTTGGTGATTGCTGGTTCAATTCA
AGTTTATCAAGGTCTGACCACAGTATTGGTGAGCAATGTTAAGCAGGTCAAGCAACAAGAAAACCAAGACTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAGTTAGAAGGTTGTCAGTTGGTAAAGGTAGAAGGGAACAAACTCTATGTTAAGCAGGAT
AATCAAGACCTGGCTTTTGGACTTTCAAGTGCTACTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTACCAACCAAT
GCTTTTCAATGTAAAATCTAGTACGATTAGTCAAAATAACCAGATAGTCACTATCCAAGTGACTCTTAAAAATGGGCTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG
ATGTCTCTAAATAGTAAGGTCCGCGCCTTTACCCTCTTGGAATGTCTAGTAGCCTTGTTGGTGATTGCTGGTTCAATTCA
AGTTTATCAAGGTCTGACCACAGTATTGGTGAGCAATGTTAAGCAGGTCAAGCAACAAGAAAACCAAGACTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAGTTAGAAGGTTGTCAGTTGGTAAAGGTAGAAGGGAACAAACTCTATGTTAAGCAGGAT
AATCAAGACCTGGCTTTTGGACTTTCAAGTGCTACTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTACCAACCAAT
GCTTTTCAATGTAAAATCTAGTACGATTAGTCAAAATAACCAGATAGTCACTATCCAAGTGACTCTTAAAAATGGGCTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYF | Streptococcus mutans UA140 |
56.738 |
97.241 |
0.552 |
| comYF | Streptococcus mutans UA159 |
56.028 |
97.241 |
0.545 |
| comGF/cglF | Streptococcus pneumoniae Rx1 |
50.704 |
97.931 |
0.497 |
| comGF/cglF | Streptococcus pneumoniae D39 |
50.704 |
97.931 |
0.497 |
| comGF/cglF | Streptococcus pneumoniae R6 |
50.704 |
97.931 |
0.497 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
50.704 |
97.931 |
0.497 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
47.917 |
99.31 |
0.476 |
| comGF/cglF | Streptococcus mitis SK321 |
47.917 |
99.31 |
0.476 |
| comGF | Lactococcus lactis subsp. cremoris KW2 |
44.604 |
95.862 |
0.428 |