Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | A6J87_RS05975 | Genome accession | NZ_CP020451 |
| Coordinates | 1160891..1161847 (+) | Length | 318 a.a. |
| NCBI ID | WP_080611749.1 | Uniprot ID | - |
| Organism | Streptococcus salivarius strain FDAARGOS_259 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1155891..1166847
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J87_RS05930 (A6J87_05905) | - | 1156078..1156530 (+) | 453 | WP_080611727.1 | hypothetical protein | - |
| A6J87_RS05935 (A6J87_05910) | - | 1156544..1156873 (+) | 330 | WP_080611728.1 | hypothetical protein | - |
| A6J87_RS05940 (A6J87_05915) | - | 1156878..1157150 (+) | 273 | WP_080611730.1 | hypothetical protein | - |
| A6J87_RS05945 (A6J87_05920) | - | 1157169..1158554 (+) | 1386 | WP_080611731.1 | GH25 family lysozyme | - |
| A6J87_RS05950 (A6J87_05925) | comYC | 1159175..1159477 (+) | 303 | WP_080611741.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| A6J87_RS05955 (A6J87_05930) | comYD | 1159437..1159865 (+) | 429 | WP_263969676.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| A6J87_RS05960 (A6J87_05935) | comGE | 1159837..1160127 (+) | 291 | WP_080611745.1 | competence type IV pilus minor pilin ComGE | - |
| A6J87_RS05965 (A6J87_05940) | comYF | 1160114..1160551 (+) | 438 | WP_080611747.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| A6J87_RS05970 (A6J87_05945) | comGG | 1160529..1160846 (+) | 318 | WP_060973072.1 | competence type IV pilus minor pilin ComGG | - |
| A6J87_RS05975 (A6J87_05950) | comYH | 1160891..1161847 (+) | 957 | WP_080611749.1 | class I SAM-dependent methyltransferase | Machinery gene |
| A6J87_RS05980 (A6J87_05955) | - | 1161904..1163097 (+) | 1194 | WP_073689934.1 | acetate kinase | - |
| A6J87_RS05985 (A6J87_05960) | - | 1163348..1163545 (+) | 198 | WP_013991261.1 | helix-turn-helix transcriptional regulator | - |
| A6J87_RS05990 (A6J87_05965) | - | 1163557..1164213 (+) | 657 | WP_064523497.1 | CPBP family intramembrane glutamic endopeptidase | - |
| A6J87_RS05995 (A6J87_05970) | - | 1164291..1164737 (+) | 447 | WP_013991259.1 | hypothetical protein | - |
| A6J87_RS06000 (A6J87_05975) | - | 1164850..1165512 (+) | 663 | WP_013991258.1 | CPBP family intramembrane glutamic endopeptidase | - |
| A6J87_RS06005 (A6J87_05980) | proC | 1165539..1166309 (-) | 771 | WP_013991257.1 | pyrroline-5-carboxylate reductase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35791.66 Da Isoelectric Point: 4.3440
>NTDB_id=223257 A6J87_RS05975 WP_080611749.1 1160891..1161847(+) (comYH) [Streptococcus salivarius strain FDAARGOS_259]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVTNEVIIKNNEKLRALDLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDILEIGSGTGNLAETLLNNSQKNLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHSMKSIFVLKKQTENAPETFVYPLSDLQNPEILKDFTDNFQKWKSDNSIF
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVTNEVIIKNNEKLRALDLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDILEIGSGTGNLAETLLNNSQKNLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHSMKSIFVLKKQTENAPETFVYPLSDLQNPEILKDFTDNFQKWKSDNSIF
Nucleotide
Download Length: 957 bp
>NTDB_id=223257 A6J87_RS05975 WP_080611749.1 1160891..1161847(+) (comYH) [Streptococcus salivarius strain FDAARGOS_259]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAACTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGAGCTCTTGATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTGCAAGCCAATCACCAATTTACACCAGATGCTATTGGATTTATCATTCTTTACCTACTCGAAGGTTTGACCAA
GGACGACCAATTAGATATTTTAGAGATTGGTTCAGGGACAGGAAACTTAGCTGAAACCCTTCTAAATAATAGTCAGAAAA
ACCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCAAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACACATTCTCAAAGAGAGTGATGTTATTATCAGTGACCTACCTGTTGG
GTATTACCCAAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACCTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGACTTGCTTAAGAAATGGCTATCAGGATATGCTGATATTATTGCCGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAGCATGAAGTCTATCTTCGTGCTTAAAAAACAAACTGAAAATGCTCCAGAGACCTTCGTTTATCCACTTAGCG
ATTTGCAAAACCCAGAGATCCTCAAGGATTTCACAGATAATTTTCAAAAATGGAAATCAGATAATTCCATTTTCTAG
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAACTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGAGCTCTTGATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTGCAAGCCAATCACCAATTTACACCAGATGCTATTGGATTTATCATTCTTTACCTACTCGAAGGTTTGACCAA
GGACGACCAATTAGATATTTTAGAGATTGGTTCAGGGACAGGAAACTTAGCTGAAACCCTTCTAAATAATAGTCAGAAAA
ACCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCAAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACACATTCTCAAAGAGAGTGATGTTATTATCAGTGACCTACCTGTTGG
GTATTACCCAAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACCTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGACTTGCTTAAGAAATGGCTATCAGGATATGCTGATATTATTGCCGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAGCATGAAGTCTATCTTCGTGCTTAAAAAACAAACTGAAAATGCTCCAGAGACCTTCGTTTATCCACTTAGCG
ATTTGCAAAACCCAGAGATCCTCAAGGATTTCACAGATAATTTTCAAAAATGGAAATCAGATAATTCCATTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
69.524 |
99.057 |
0.689 |
| comYH | Streptococcus mutans UA140 |
69.524 |
99.057 |
0.689 |