Detailed information NTG0223182

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: A6J85_RS05135
• Genome accession: NZ_CP020450
• Coordinates: 1011221..1011712 (+)
• Length: 163 a.a.
• NCBI ID: WP_012130902.1
• Uniprot ID: A0AAP2K452
• Organism: Streptococcus gordonii strain FDAARGOS_257
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1002737..1013554	1011221..1011712	within	0

Gene organization within MGE regions

Location: 1002737..1013554

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6J85_RS05090 (A6J85_05030)	-	1002737..1003027 (+)	291	WP_012130909.1	hypothetical protein	-
A6J85_RS05095 (A6J85_05035)	-	1003430..1005403 (+)	1974	WP_045634145.1	ABC transporter substrate binding protein	-
A6J85_RS05100 (A6J85_05040)	-	1005403..1006206 (+)	804	WP_045634144.1	ABC transporter ATP-binding protein	-
A6J85_RS05105 (A6J85_05045)	groES	1006367..1006648 (+)	282	WP_045634143.1	co-chaperone GroES	-
A6J85_RS05110 (A6J85_05050)	groL	1006671..1008293 (+)	1623	WP_045773434.1	chaperonin GroEL	-
A6J85_RS05115 (A6J85_05055)	-	1008417..1009175 (+)	759	WP_061601177.1	epoxyqueuosine reductase QueH	-
A6J85_RS05120 (A6J85_05060)	-	1009269..1010090 (-)	822	WP_082307347.1	PrsW family glutamic-type intramembrane protease	-
A6J85_RS05125 (A6J85_05065)	folE	1010138..1010701 (-)	564	WP_082307348.1	GTP cyclohydrolase I FolE	-
A6J85_RS05130 (A6J85_05070)	rpsF	1010914..1011204 (+)	291	WP_002896497.1	30S ribosomal protein S6	-
A6J85_RS05135 (A6J85_05075)	ssb	1011221..1011712 (+)	492	WP_012130902.1	single-stranded DNA-binding protein	Machinery gene
A6J85_RS05140 (A6J85_05080)	rpsR	1011751..1011990 (+)	240	WP_000068664.1	30S ribosomal protein S18	-
A6J85_RS05145 (A6J85_05085)	-	1012044..1012700 (+)	657	WP_082307349.1	TetR/AcrR family transcriptional regulator	-
A6J85_RS05150 (A6J85_05090)	-	1012841..1013554 (+)	714	WP_048777243.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 163 a.a.
• Molecular weight: 18152.89 Da
• Isoelectric Point: 5.2060

>NTDB_id=223182 A6J85_RS05135 WP_012130902.1 1011221..1011712(+) (ssb) [Streptococcus gordonii strain FDAARGOS_257]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNHNGEREADFINVVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRTSREGQSGGYTPNNFGGNAAPSFGGADSSHQVPNFSRDENPFGNSNPMDISDDD
LPF

Nucleotide

• Length: 492 bp

>NTDB_id=223182 A6J85_RS05135 WP_012130902.1 1011221..1011712(+) (ssb) [Streptococcus gordonii strain FDAARGOS_257]
ATGATAAATAACGTTGTACTTGTAGGTCGCATGACCCGCGATGCTGAACTACGCTACACACCGCAAAACCAAGCGGTTGC
AACATTTACATTAGCTGTTAATCGTAATTTTAAAAACCATAATGGTGAAAGAGAAGCAGACTTTATCAATGTTGTCATCT
GGCGTCAGCAGGCAGAAAATCTTGCTAATTGGGCTAAAAAAGGTGCTCTAGTCGGAATTACAGGTCGTATTCAGACTCGT
AATTATGAAAATCAGCAAGGTCAACGTGTCTACGTCACTGAGGTCGTTGCAGACAACTTCCAACTATTGGAGAGTCGTAC
AAGCCGTGAAGGACAGTCTGGAGGCTATACTCCAAATAACTTTGGCGGTAATGCAGCACCAAGCTTCGGAGGCGCTGACT
CGTCTCACCAAGTACCGAATTTTTCTCGTGATGAGAATCCATTTGGTAACTCAAATCCAATGGATATCTCAGATGATGAT
CTGCCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	60	100	0.626
ssbA	Bacillus subtilis subsp. subtilis str. 168	56.977	100	0.601
ssbB	Bacillus subtilis subsp. subtilis str. 168	56.604	65.031	0.368
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	66.871	0.362