Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | A6J85_RS04950 | Genome accession | NZ_CP020450 |
| Coordinates | 979452..980405 (+) | Length | 317 a.a. |
| NCBI ID | WP_048777263.1 | Uniprot ID | A0AB35FX01 |
| Organism | Streptococcus gordonii strain FDAARGOS_257 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 974452..985405
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J85_RS04910 (A6J85_04855) | - | 975244..975603 (+) | 360 | WP_008810065.1 | DUF1033 family protein | - |
| A6J85_RS04915 (A6J85_04860) | comYA | 975716..976654 (+) | 939 | WP_046164736.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| A6J85_RS04920 (A6J85_04865) | comYB | 976587..977621 (+) | 1035 | WP_105165110.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| A6J85_RS04925 (A6J85_04870) | comYC | 977618..977935 (+) | 318 | WP_045634162.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| A6J85_RS04930 (A6J85_04875) | comYD | 977895..978323 (+) | 429 | WP_045634161.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| A6J85_RS04935 (A6J85_04880) | comGE/cglE | 978295..978588 (+) | 294 | WP_045634160.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| A6J85_RS04940 (A6J85_04885) | comGF/cglF | 978572..979009 (+) | 438 | WP_061596806.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| A6J85_RS04945 (A6J85_04890) | comGG | 978990..979421 (+) | 432 | WP_223351938.1 | competence type IV pilus minor pilin ComGG | - |
| A6J85_RS04950 (A6J85_04895) | comYH | 979452..980405 (+) | 954 | WP_048777263.1 | class I SAM-dependent methyltransferase | Machinery gene |
| A6J85_RS04955 (A6J85_04900) | - | 980455..981645 (+) | 1191 | WP_048777262.1 | acetate kinase | - |
| A6J85_RS04960 (A6J85_04905) | - | 981693..982358 (+) | 666 | WP_048777261.1 | CPBP family intramembrane glutamic endopeptidase | - |
| A6J85_RS04965 (A6J85_04910) | folP | 982436..983401 (+) | 966 | WP_082307344.1 | dihydropteroate synthase | - |
| A6J85_RS04970 (A6J85_04915) | - | 983406..984737 (+) | 1332 | WP_225791211.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36012.15 Da Isoelectric Point: 4.8739
>NTDB_id=223179 A6J85_RS04950 WP_048777263.1 979452..980405(+) (comYH) [Streptococcus gordonii strain FDAARGOS_257]
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQTDLEIVKKNHQTLKSLKLSREEWRRAYQFILMKGAQT
EPLQANHQFTPDAIGFLLIFIIDQLMVASDITLLEMGSGTGNLAETILNNSQKEIDYLGLEIDDLLIDLSASIAEVMGSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKVDGYAIFLAPNHLLTSPQ
SDLLKSWLKDNASLVAMIALPEKLFASVSQAKTVFVLQKQKNIKSEPFVYALADLQNHEEITRFRESFQKWRKVSEN
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQTDLEIVKKNHQTLKSLKLSREEWRRAYQFILMKGAQT
EPLQANHQFTPDAIGFLLIFIIDQLMVASDITLLEMGSGTGNLAETILNNSQKEIDYLGLEIDDLLIDLSASIAEVMGSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKVDGYAIFLAPNHLLTSPQ
SDLLKSWLKDNASLVAMIALPEKLFASVSQAKTVFVLQKQKNIKSEPFVYALADLQNHEEITRFRESFQKWRKVSEN
Nucleotide
Download Length: 954 bp
>NTDB_id=223179 A6J85_RS04950 WP_048777263.1 979452..980405(+) (comYH) [Streptococcus gordonii strain FDAARGOS_257]
ATGAATTTTGAAAAAATTGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTAATTGAGCAAAACGGTATCTATTTGGATGGGCAAACGGACTTAGAAATTGTCAAAAAGAATCATC
AAACTTTGAAGAGCTTAAAGCTAAGCAGAGAAGAGTGGCGGAGAGCCTATCAGTTCATTCTGATGAAGGGTGCTCAGACA
GAGCCTTTGCAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGTTGATTTTTATCATCGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGAAGTGGAACTGGAAATCTTGCAGAGACAATCCTGAACAATAGTCAGAAAG
AGATTGATTATCTAGGATTAGAAATCGATGATTTACTGATTGACCTATCTGCCAGTATTGCAGAAGTGATGGGTTCAAAG
GCACATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATTATCAGCGATCTGCCTGTCGG
TTACTATCCGGATGATCAGATTGCCAGTCGCTATCAGGTAGCCAGTCAGACAGAGCACACCTATGCTCATCATCTGTTGA
TGGAGCAGGCATTAAAGTATTTAAAGGTTGATGGCTATGCGATCTTCTTAGCTCCTAATCACCTCTTAACCAGCCCGCAG
AGTGACTTGCTTAAATCCTGGCTCAAAGACAATGCCAGCTTAGTAGCAATGATTGCTTTGCCAGAAAAACTCTTTGCATC
AGTTTCTCAGGCTAAGACGGTGTTTGTTTTGCAAAAACAAAAAAATATAAAATCAGAACCTTTTGTCTATGCATTGGCTG
ATCTACAAAATCATGAAGAAATTACTCGCTTCCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA
ATGAATTTTGAAAAAATTGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTAATTGAGCAAAACGGTATCTATTTGGATGGGCAAACGGACTTAGAAATTGTCAAAAAGAATCATC
AAACTTTGAAGAGCTTAAAGCTAAGCAGAGAAGAGTGGCGGAGAGCCTATCAGTTCATTCTGATGAAGGGTGCTCAGACA
GAGCCTTTGCAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGTTGATTTTTATCATCGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGAAGTGGAACTGGAAATCTTGCAGAGACAATCCTGAACAATAGTCAGAAAG
AGATTGATTATCTAGGATTAGAAATCGATGATTTACTGATTGACCTATCTGCCAGTATTGCAGAAGTGATGGGTTCAAAG
GCACATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATTATCAGCGATCTGCCTGTCGG
TTACTATCCGGATGATCAGATTGCCAGTCGCTATCAGGTAGCCAGTCAGACAGAGCACACCTATGCTCATCATCTGTTGA
TGGAGCAGGCATTAAAGTATTTAAAGGTTGATGGCTATGCGATCTTCTTAGCTCCTAATCACCTCTTAACCAGCCCGCAG
AGTGACTTGCTTAAATCCTGGCTCAAAGACAATGCCAGCTTAGTAGCAATGATTGCTTTGCCAGAAAAACTCTTTGCATC
AGTTTCTCAGGCTAAGACGGTGTTTGTTTTGCAAAAACAAAAAAATATAAAATCAGAACCTTTTGTCTATGCATTGGCTG
ATCTACAAAATCATGAAGAAATTACTCGCTTCCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
58.786 |
98.738 |
0.58 |
| comYH | Streptococcus mutans UA140 |
58.786 |
98.738 |
0.58 |